CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41206788|41207071
Strand -
CircType exon
Host Gene ENSG00000167600.12;
Algorism CIRI2;
Sequence TCCCCTGGATCTGCAGCCCACACGTGGGAGTCTGGCTGTCACCTTCACAAGCCACAGAAACGGCCACACATGTTCACAGCTCACACGCCCTCTCCATTCATCGAACTTCTCAGTGTCCCTGTCCCTGGTGCCTGGCACAGGGAACAGCATGCCCCCTCCGGGGTCATGCCACCCAGAGACTGTCGCTGTCTATGGCCCCAACTCATGCTCCCTCTCTTGGCTACACCACTCTCCCAGCCTGTGACCACCGATGTCCACACACCCCCAACCACTTGTCCACACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41206788|41207071 hsa-miR-185-5p 0 0 1
chr19:41206788|41207071 hsa-miR-185-3p 0 0 1
chr19:41206788|41207071 hsa-miR-326 0 0 1
chr19:41206788|41207071 hsa-miR-493-5p 0 0 1
chr19:41206788|41207071 hsa-miR-493-3p 0 0 1
chr19:41206788|41207071 hsa-miR-558 0 0 1
chr19:41206788|41207071 hsa-miR-571 0 0 1
chr19:41206788|41207071 hsa-miR-593-5p 0 0 1
chr19:41206788|41207071 hsa-miR-593-3p 0 0 1
chr19:41206788|41207071 hsa-miR-662 0 1 1
chr19:41206788|41207071 hsa-miR-1227-5p 0 0 1
chr19:41206788|41207071 hsa-miR-1227-3p 0 0 1
chr19:41206788|41207071 hsa-miR-663b 1 0 1
chr19:41206788|41207071 hsa-miR-1293 1 0 1
chr19:41206788|41207071 hsa-miR-1253 0 0 1
chr19:41206788|41207071 hsa-miR-1275 1 0 1
chr19:41206788|41207071 hsa-miR-140-5p 0 0 1
chr19:41206788|41207071 hsa-miR-532-3p 0 0 1
chr19:41206788|41207071 hsa-miR-339-5p 0 0 1
chr19:41206788|41207071 hsa-miR-513a-5p 0 0 1
chr19:41206788|41207071 hsa-miR-330-5p 0 0 1
chr19:41206788|41207071 hsa-miR-542-3p 0 0 1
chr19:41206788|41207071 hsa-miR-1274a 0 0 1
chr19:41206788|41207071 hsa-miR-323-5p 0 0 1
chr19:41206788|41207071 hsa-miR-1274b 0 0 1
chr19:41206788|41207071 hsa-miR-220c 0 0 1
chr19:41206788|41207071 hsa-miR-644 0 0 1
chr19:41206788|41207071 hsa-miR-1300 0 0 1
chr19:41206788|41207071 hsa-miR-1268 0 0 1
chr19:41206788|41207071 hsa-miR-147 0 0 1
chr19:41206788|41207071 hsa-miR-219-1-3p 0 0 1
chr19:41206788|41207071 hsa-miR-198 1 0 0
chr19:41206788|41207071 hsa-miR-147a 0 1 0
chr19:41206788|41207071 hsa-miR-604 0 1 0
chr19:41206788|41207071 hsa-miR-608 1 0 0
chr19:41206788|41207071 hsa-miR-762 1 0 0
chr19:41206788|41207071 hsa-miR-1268a 1 0 0
chr19:41206788|41207071 hsa-miR-1270 1 0 0
chr19:41206788|41207071 hsa-miR-1471 1 1 0
chr19:41206788|41207071 hsa-miR-2117 0 1 0
chr19:41206788|41207071 hsa-miR-3137 1 0 0
chr19:41206788|41207071 hsa-miR-3138 1 1 0
chr19:41206788|41207071 hsa-miR-3147 1 0 0
chr19:41206788|41207071 hsa-miR-3154 1 0 0
chr19:41206788|41207071 hsa-miR-4296 1 1 0
chr19:41206788|41207071 hsa-miR-4298 1 0 0
chr19:41206788|41207071 hsa-miR-4322 1 1 0
chr19:41206788|41207071 hsa-miR-4259 0 1 0
chr19:41206788|41207071 hsa-miR-4253 1 0 0
chr19:41206788|41207071 hsa-miR-4265 1 1 0
chr19:41206788|41207071 hsa-miR-4270 1 0 0
chr19:41206788|41207071 hsa-miR-4281 1 0 0
chr19:41206788|41207071 hsa-miR-3652 1 0 0
chr19:41206788|41207071 hsa-miR-3911 1 1 0
chr19:41206788|41207071 hsa-miR-1268b 1 0 0
chr19:41206788|41207071 hsa-miR-4430 1 0 0
chr19:41206788|41207071 hsa-miR-4455 1 1 0
chr19:41206788|41207071 hsa-miR-3689c 1 0 0
chr19:41206788|41207071 hsa-miR-4481 1 0 0
chr19:41206788|41207071 hsa-miR-4491 1 0 0
chr19:41206788|41207071 hsa-miR-4507 1 0 0
chr19:41206788|41207071 hsa-miR-4510 1 1 0
chr19:41206788|41207071 hsa-miR-4651 1 0 0
chr19:41206788|41207071 hsa-miR-4656 1 0 0
chr19:41206788|41207071 hsa-miR-4657 0 1 0
chr19:41206788|41207071 hsa-miR-4673 0 1 0
chr19:41206788|41207071 hsa-miR-4688 1 0 0
chr19:41206788|41207071 hsa-miR-4689 1 0 0
chr19:41206788|41207071 hsa-miR-4706 1 0 0
chr19:41206788|41207071 hsa-miR-4710 1 0 0
chr19:41206788|41207071 hsa-miR-4739 1 0 0
chr19:41206788|41207071 hsa-miR-4741 1 0 0
chr19:41206788|41207071 hsa-miR-5192 1 1 0
chr19:41206788|41207071 hsa-miR-5572 1 0 0
chr19:41206788|41207071 hsa-miR-5698 1 0 0
chr19:41206788|41207071 hsa-miR-5787 1 0 0
chr19:41206788|41207071 hsa-miR-6076 0 1 0
chr19:41206788|41207071 hsa-miR-6081 1 0 0
chr19:41206788|41207071 hsa-miR-6085 1 0 0
chr19:41206788|41207071 hsa-miR-6086 1 0 0
chr19:41206788|41207071 hsa-miR-6090 1 0 0
chr19:41206788|41207071 hsa-miR-6127 1 1 0
chr19:41206788|41207071 hsa-miR-6129 0 1 0
chr19:41206788|41207071 hsa-miR-6133 1 1 0
chr19:41206788|41207071 hsa-miR-8085 1 1 0
chr19:41206788|41207071 hsa-miR-12122 1 1 0
chr19:41206788|41207071 hsa-miR-12127 1 0 0
chr19:41206788|41207071 hsa-miR-12128 0 1 0
chr19:41206788|41207071 hsa-miR-211-3p 0 1 0
chr19:41206788|41207071 hsa-miR-4433b-3p 1 0 0
chr19:41206788|41207071 hsa-miR-92a-1-5p 1 0 0
chr19:41206788|41207071 hsa-miR-128-1-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4731-5p 1 0 0
chr19:41206788|41207071 hsa-miR-323a-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6747-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4433a-3p 1 0 0
chr19:41206788|41207071 hsa-miR-6825-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6894-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4687-3p 1 0 0
chr19:41206788|41207071 hsa-miR-6728-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6804-5p 1 0 0
chr19:41206788|41207071 hsa-miR-3192-5p 1 1 0
chr19:41206788|41207071 hsa-miR-3677-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6730-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4755-3p 0 1 0
chr19:41206788|41207071 hsa-miR-4474-3p 1 1 0
chr19:41206788|41207071 hsa-miR-3622b-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6759-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6721-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4655-5p 1 0 0
chr19:41206788|41207071 hsa-miR-8069 1 0 0
chr19:41206788|41207071 hsa-miR-7845-5p 1 1 0
chr19:41206788|41207071 hsa-miR-7108-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6716-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6748-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6772-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6829-5p 0 1 0
chr19:41206788|41207071 hsa-miR-6732-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6805-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6827-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6798-5p 1 0 0
chr19:41206788|41207071 hsa-miR-3194-5p 1 0 0
chr19:41206788|41207071 hsa-miR-30b-3p 1 0 0
chr19:41206788|41207071 hsa-miR-5006-5p 0 1 0
chr19:41206788|41207071 hsa-miR-6786-5p 1 0 0
chr19:41206788|41207071 hsa-miR-1226-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6740-5p 1 0 0
chr19:41206788|41207071 hsa-miR-204-3p 1 0 0
chr19:41206788|41207071 hsa-miR-1229-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4640-5p 1 0 0
chr19:41206788|41207071 hsa-miR-30c-2-3p 0 1 0
chr19:41206788|41207071 hsa-miR-6771-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4787-5p 1 0 0
chr19:41206788|41207071 hsa-miR-149-3p 1 1 0
chr19:41206788|41207071 hsa-miR-4733-3p 0 1 0
chr19:41206788|41207071 hsa-miR-6824-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6800-5p 0 1 0
chr19:41206788|41207071 hsa-miR-7850-5p 1 0 0
chr19:41206788|41207071 hsa-miR-574-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6801-5p 1 0 0
chr19:41206788|41207071 hsa-miR-1914-5p 0 1 0
chr19:41206788|41207071 hsa-miR-1207-5p 1 1 0
chr19:41206788|41207071 hsa-miR-3689b-3p 1 0 0
chr19:41206788|41207071 hsa-miR-4763-3p 1 0 0
chr19:41206788|41207071 hsa-miR-6769b-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6787-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6870-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6775-5p 1 0 0
chr19:41206788|41207071 hsa-miR-1343-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6726-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6737-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6743-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6752-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6754-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6756-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6803-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6815-5p 0 1 0
chr19:41206788|41207071 hsa-miR-6819-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6842-5p 1 0 0
chr19:41206788|41207071 hsa-miR-7110-5p 1 1 0
chr19:41206788|41207071 hsa-miR-10401-5p 1 1 0
chr19:41206788|41207071 hsa-miR-1249-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6751-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6763-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6779-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6780a-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6788-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6797-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6808-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6879-5p 1 0 0
chr19:41206788|41207071 hsa-miR-7111-5p 1 0 0
chr19:41206788|41207071 hsa-miR-3620-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4728-5p 1 0 0
chr19:41206788|41207071 hsa-miR-5196-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6862-5p 0 1 0
chr19:41206788|41207071 hsa-miR-10526-3p 1 0 0
chr19:41206788|41207071 hsa-miR-1237-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4725-3p 1 0 0
chr19:41206788|41207071 hsa-miR-4726-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4745-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6794-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6883-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6889-5p 1 0 0
chr19:41206788|41207071 hsa-miR-3187-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4723-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6845-5p 0 1 0
chr19:41206788|41207071 hsa-miR-939-5p 1 0 0
chr19:41206788|41207071 hsa-miR-1238-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4758-5p 1 0 0
chr19:41206788|41207071 hsa-miR-3940-5p 1 0 0
chr19:41206788|41207071 hsa-miR-30c-1-3p 1 1 0
chr19:41206788|41207071 hsa-miR-6731-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6758-5p 0 1 0
chr19:41206788|41207071 hsa-miR-6856-5p 1 1 0
chr19:41206788|41207071 hsa-miR-4665-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6736-5p 1 0 0
chr19:41206788|41207071 hsa-miR-10398-3p 1 0 0
chr19:41206788|41207071 hsa-miR-3679-5p 1 0 0
chr19:41206788|41207071 hsa-miR-4646-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6891-5p 1 0 0
chr19:41206788|41207071 hsa-miR-541-3p 1 0 0
chr19:41206788|41207071 hsa-miR-6750-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6785-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6849-5p 1 0 0
chr19:41206788|41207071 hsa-miR-6762-5p 1 1 0
chr19:41206788|41207071 hsa-miR-6718-5p 1 0 0
chr19:41206788|41207071 hsa-miR-9851-3p 0 1 0
chr19:41206788|41207071 hsa-miR-6884-5p 0 1 0
chr19:41206788|41207071 hsa-miR-10394-5p 0 1 0
chr19:41206788|41207071 hsa-miR-6797-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41206788|41207071
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MFTAHTPSPFIELLSVPVPGAWHREQHAPSGVMPPRDCRCLWPQLMLPLLATPLSQPVTTDVHTPPTTCPH
Nucleotide Sequence ATGTTCACAGCTCACACGCCCTCTCCATTCATCGAACTTCTCAGTGTCCCTGTCCCTGGTGCCTGGCACAGGGAACAGCATGCCCCCTCCGGGGTCATGCCACCCAGAGACTGTCGCTGTCTATGGCCCCAACTCATGCTCCCTCTCTTGGCTACACCACTCTCCCAGCCTGTGACCACCGATGTCCACACACCCCCAACCACTTGTCCACAC
CircID chr19:41206788|41207071
ORF Type ORF2
Protein Length 79
Nucleotide Length 240
Protein Sequence MDLQPTRGSLAVTFTSHRNGHTCSQLTRPLHSSNFSVSLSLVPGTGNSMPPPGSCHPETVAVYGPNSCSLSWLHHSPSL
Nucleotide Sequence CTGGATCTGCAGCCCACACGTGGGAGTCTGGCTGTCACCTTCACAAGCCACAGAAACGGCCACACATGTTCACAGCTCACACGCCCTCTCCATTCATCGAACTTCTCAGTGTCCCTGTCCCTGGTGCCTGGCACAGGGAACAGCATGCCCCCTCCGGGGTCATGCCACCCAGAGACTGTCGCTGTCTATGGCCCCAACTCATGCTCCCTCTCTTGGCTACACCACTCTCCCAGCCTGTGA
CircID chr19:41206788|41207071
ORF Type ORF3
Protein Length 83
Nucleotide Length 249
Protein Sequence MSPSQATETATHVHSSHALSIHRTSQCPCPWCLAQGTACPLRGHATQRLSLSMAPTHAPSLGYTTLPACDHRCPHTPNHLSTQ
Nucleotide Sequence CTGTCACCTTCACAAGCCACAGAAACGGCCACACATGTTCACAGCTCACACGCCCTCTCCATTCATCGAACTTCTCAGTGTCCCTGTCCCTGGTGCCTGGCACAGGGAACAGCATGCCCCCTCCGGGGTCATGCCACCCAGAGACTGTCGCTGTCTATGGCCCCAACTCATGCTCCCTCTCTTGGCTACACCACTCTCCCAGCCTGTGACCACCGATGTCCACACACCCCCAACCACTTGTCCACACAG
CircID chr19:41206788|41207071
ORF Type ORF4
Protein Length 67
Nucleotide Length 204
Protein Sequence LCGQVVGGVWTSVVTGWESGVAKRGSMSWGHRQRQSLGGMTPEGACCSLCQAPGTGTLRSSMNGEGV
Nucleotide Sequence CTGTGTGGACAAGTGGTTGGGGGTGTGTGGACATCGGTGGTCACAGGCTGGGAGAGTGGTGTAGCCAAGAGAGGGAGCATGAGTTGGGGCCATAGACAGCGACAGTCTCTGGGTGGCATGACCCCGGAGGGGGCATGCTGTTCCCTGTGCCAGGCACCAGGGACAGGGACACTGAGAAGTTCGATGAATGGAGAGGGCGTGTGA
CircID chr19:41206788|41207071
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MLFPVPGTRDRDTEKFDEWRGRVSCEHVWPFLWLVKVTARLPRVGCRSRG
Nucleotide Sequence ATGCTGTTCCCTGTGCCAGGCACCAGGGACAGGGACACTGAGAAGTTCGATGAATGGAGAGGGCGTGTGAGCTGTGAACATGTGTGGCCGTTTCTGTGGCTTGTGAAGGTGACAGCCAGACTCCCACGTGTGGGCTGCAGATCCAGGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab