CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41352724|41352903
Strand -
CircType exon
Host Gene ENSG00000105329.8;
Algorism CIRI2;
Sequence CTCCTTGGCGTAGTAGTCGGCCTCAGGCTCGGGCTCCGGTTCTGCACTCTCCCCGGCCACCCGGTCGCGGGTGCTGTTGTACAGGGCGAGCACGGCCTCGGGCAGCGGGCCGGGCGGCACCTCCCCCTGGCTCGGGGGGCTGGCGAGCCGCAGCTTGGACAGGATCTGGCCGCGGATGGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41352724|41352903 hsa-miR-298 0 0 1
chr19:41352724|41352903 hsa-miR-1203 0 1 1
chr19:41352724|41352903 hsa-miR-1249-5p 0 0 1
chr19:41352724|41352903 hsa-miR-1249-3p 0 0 1
chr19:41352724|41352903 hsa-miR-486-5p 0 1 1
chr19:41352724|41352903 hsa-miR-615-3p 0 1 1
chr19:41352724|41352903 hsa-miR-146b-3p 0 0 1
chr19:41352724|41352903 hsa-miR-636 1 0 0
chr19:41352724|41352903 hsa-miR-661 1 0 0
chr19:41352724|41352903 hsa-miR-762 1 0 0
chr19:41352724|41352903 hsa-miR-663b 1 0 0
chr19:41352724|41352903 hsa-miR-1913 1 0 0
chr19:41352724|41352903 hsa-miR-544b 0 1 0
chr19:41352724|41352903 hsa-miR-3175 0 1 0
chr19:41352724|41352903 hsa-miR-4478 1 0 0
chr19:41352724|41352903 hsa-miR-4479 1 0 0
chr19:41352724|41352903 hsa-miR-4539 1 0 0
chr19:41352724|41352903 hsa-miR-3972 1 1 0
chr19:41352724|41352903 hsa-miR-5192 0 1 0
chr19:41352724|41352903 hsa-miR-5698 0 1 0
chr19:41352724|41352903 hsa-miR-8085 0 1 0
chr19:41352724|41352903 hsa-miR-8089 1 0 0
chr19:41352724|41352903 hsa-miR-6765-5p 1 0 0
chr19:41352724|41352903 hsa-miR-6836-3p 1 0 0
chr19:41352724|41352903 hsa-miR-6825-5p 1 1 0
chr19:41352724|41352903 hsa-miR-6894-5p 1 0 0
chr19:41352724|41352903 hsa-miR-6720-5p 1 0 0
chr19:41352724|41352903 hsa-miR-6799-5p 0 1 0
chr19:41352724|41352903 hsa-miR-6089 1 1 0
chr19:41352724|41352903 hsa-miR-3677-5p 1 0 0
chr19:41352724|41352903 hsa-miR-127-3p 1 1 0
chr19:41352724|41352903 hsa-miR-6726-3p 0 1 0
chr19:41352724|41352903 hsa-miR-6798-5p 0 1 0
chr19:41352724|41352903 hsa-miR-3194-5p 0 1 0
chr19:41352724|41352903 hsa-miR-6850-5p 1 0 0
chr19:41352724|41352903 hsa-miR-939-3p 1 0 0
chr19:41352724|41352903 hsa-miR-6763-3p 1 0 0
chr19:41352724|41352903 hsa-miR-6749-5p 1 0 0
chr19:41352724|41352903 hsa-miR-3065-3p 0 1 0
chr19:41352724|41352903 hsa-miR-6743-3p 0 1 0
chr19:41352724|41352903 hsa-miR-4632-3p 1 1 0
chr19:41352724|41352903 hsa-miR-4649-3p 1 1 0
chr19:41352724|41352903 hsa-miR-4763-3p 1 0 0
chr19:41352724|41352903 hsa-miR-6787-5p 1 0 0
chr19:41352724|41352903 hsa-miR-6812-5p 1 0 0
chr19:41352724|41352903 hsa-miR-6756-5p 1 0 0
chr19:41352724|41352903 hsa-miR-7111-5p 0 1 0
chr19:41352724|41352903 hsa-miR-4726-5p 1 0 0
chr19:41352724|41352903 hsa-miR-6795-5p 1 0 0
chr19:41352724|41352903 hsa-miR-6883-5p 0 1 0
chr19:41352724|41352903 hsa-miR-6889-5p 1 1 0
chr19:41352724|41352903 hsa-miR-10396a-3p 1 0 0
chr19:41352724|41352903 hsa-miR-10396b-3p 1 0 0
chr19:41352724|41352903 hsa-miR-10392-3p 1 0 0
chr19:41352724|41352903 hsa-miR-128-2-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41352724|41352903
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MLYRASTASGSGPGGTSPWLGGLASRSLDRIWPRM
Nucleotide Sequence CTGTTGTACAGGGCGAGCACGGCCTCGGGCAGCGGGCCGGGCGGCACCTCCCCCTGGCTCGGGGGGCTGGCGAGCCGCAGCTTGGACAGGATCTGGCCGCGGATG
CircID chr19:41352724|41352903
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MHSPRPPGRGCCCTGRARPRAAGRAAPPPGSGGWRAAAWTGSGRGW
Nucleotide Sequence CTGCACTCTCCCCGGCCACCCGGTCGCGGGTGCTGTTGTACAGGGCGAGCACGGCCTCGGGCAGCGGGCCGGGCGGCACCTCCCCCTGGCTCGGGGGGCTGGCGAGCCGCAGCTTGGACAGGATCTGGCCGCGGATGG
CircID chr19:41352724|41352903
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MSKLRLASPPSQGEVPPGPLPEAVLALYNSTRDRVAGESAEPEPEPEADYYAKE
Nucleotide Sequence CTGTCCAAGCTGCGGCTCGCCAGCCCCCCGAGCCAGGGGGAGGTGCCGCCCGGCCCGCTGCCCGAGGCCGTGCTCGCCCTGTACAACAGCACCCGCGACCGGGTGGCCGGGGAGAGTGCAGAACCGGAGCCCGAGCCTGAGGCCGACTACTACGCCAAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab