CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41426104|41426436
Strand +
CircType exon
Host Gene ENSG00000268475.1;
Algorism CIRI2;
Sequence CTCCGCCGCTTCTTGCTGTCAGCAGCCTGCCGGAGCTTCCCACAGTGGCTGCCTGGAGGTGGTGGCAGCCAAGTCTCCAGCTGCTCAGATACTGATGTCCCCTACCTGCTGTTGGCCGTCAAGTCAGAACCAGGGCGCTTTGCAGAACGACAGGCCGTGAGAGAGACGTGGGGCAGTCCAGCTCCAGGGATCCGGCTGCTCTTCCTGCTAGGGTCTCCGGTGGGTGAGGCGGGGCCTGACCTAGACTCACTAGTGGCCTGGGAGAGCCGTCGCTACAGTGACCTGCTGCTCTGGGACTTCCTCGACGTCCCATTCAACCAGACGCTCAAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41426104|41426436 hsa-miR-15a-5p 0 0 1
chr19:41426104|41426436 hsa-miR-15a-3p 0 0 1
chr19:41426104|41426436 hsa-miR-214-5p 0 0 1
chr19:41426104|41426436 hsa-miR-214-3p 0 0 1
chr19:41426104|41426436 hsa-miR-15b-5p 0 0 1
chr19:41426104|41426436 hsa-miR-15b-3p 0 0 1
chr19:41426104|41426436 hsa-miR-150-5p 0 0 1
chr19:41426104|41426436 hsa-miR-150-3p 0 0 1
chr19:41426104|41426436 hsa-miR-195-5p 0 0 1
chr19:41426104|41426436 hsa-miR-195-3p 0 0 1
chr19:41426104|41426436 hsa-miR-345-5p 0 0 1
chr19:41426104|41426436 hsa-miR-345-3p 0 0 1
chr19:41426104|41426436 hsa-miR-422a 0 0 1
chr19:41426104|41426436 hsa-miR-424-5p 0 0 1
chr19:41426104|41426436 hsa-miR-424-3p 0 0 1
chr19:41426104|41426436 hsa-miR-497-5p 0 0 1
chr19:41426104|41426436 hsa-miR-497-3p 0 0 1
chr19:41426104|41426436 hsa-miR-518f-5p 0 0 1
chr19:41426104|41426436 hsa-miR-518f-3p 0 0 1
chr19:41426104|41426436 hsa-miR-518b 0 0 1
chr19:41426104|41426436 hsa-miR-518c-5p 0 0 1
chr19:41426104|41426436 hsa-miR-518c-3p 0 0 1
chr19:41426104|41426436 hsa-miR-527 0 0 1
chr19:41426104|41426436 hsa-miR-563 0 0 1
chr19:41426104|41426436 hsa-miR-604 0 0 1
chr19:41426104|41426436 hsa-miR-611 0 0 1
chr19:41426104|41426436 hsa-miR-627-5p 0 0 1
chr19:41426104|41426436 hsa-miR-627-3p 0 0 1
chr19:41426104|41426436 hsa-miR-646 0 0 1
chr19:41426104|41426436 hsa-miR-647 0 0 1
chr19:41426104|41426436 hsa-miR-662 0 0 1
chr19:41426104|41426436 hsa-miR-921 0 0 1
chr19:41426104|41426436 hsa-miR-924 0 0 1
chr19:41426104|41426436 hsa-miR-1183 0 0 1
chr19:41426104|41426436 hsa-miR-1234-3p 0 0 1
chr19:41426104|41426436 hsa-miR-1208 0 0 1
chr19:41426104|41426436 hsa-miR-1288-5p 0 0 1
chr19:41426104|41426436 hsa-miR-1288-3p 0 0 1
chr19:41426104|41426436 hsa-miR-1234 0 0 1
chr19:41426104|41426436 hsa-miR-127-3p 0 0 1
chr19:41426104|41426436 hsa-miR-532-3p 0 0 1
chr19:41426104|41426436 hsa-miR-1207-3p 0 0 1
chr19:41426104|41426436 hsa-miR-628-5p 0 0 1
chr19:41426104|41426436 hsa-miR-324-3p 0 0 1
chr19:41426104|41426436 hsa-miR-518a-5p 0 0 1
chr19:41426104|41426436 hsa-miR-518a-3p 0 0 1
chr19:41426104|41426436 hsa-miR-518d-3p 0 0 1
chr19:41426104|41426436 hsa-miR-151-5p 0 0 1
chr19:41426104|41426436 hsa-miR-220b 0 0 1
chr19:41426104|41426436 hsa-miR-1280 0 0 1
chr19:41426104|41426436 hsa-miR-16 0 0 1
chr19:41426104|41426436 hsa-miR-378 0 0 1
chr19:41426104|41426436 hsa-miR-1269 0 0 1
chr19:41426104|41426436 hsa-miR-544 0 0 1
chr19:41426104|41426436 hsa-miR-1291 1 0 0
chr19:41426104|41426436 hsa-miR-3155a 1 0 0
chr19:41426104|41426436 hsa-miR-4254 1 0 0
chr19:41426104|41426436 hsa-miR-3621 1 0 0
chr19:41426104|41426436 hsa-miR-3665 1 0 0
chr19:41426104|41426436 hsa-miR-3937 1 0 0
chr19:41426104|41426436 hsa-miR-4449 1 0 0
chr19:41426104|41426436 hsa-miR-4450 1 0 0
chr19:41426104|41426436 hsa-miR-4526 1 0 0
chr19:41426104|41426436 hsa-miR-4654 1 0 0
chr19:41426104|41426436 hsa-miR-4673 1 0 0
chr19:41426104|41426436 hsa-miR-5190 1 0 0
chr19:41426104|41426436 hsa-miR-6125 1 0 0
chr19:41426104|41426436 hsa-miR-8073 1 0 0
chr19:41426104|41426436 hsa-miR-9899 1 0 0
chr19:41426104|41426436 hsa-miR-12119 1 0 0
chr19:41426104|41426436 hsa-miR-92a-2-5p 1 0 0
chr19:41426104|41426436 hsa-miR-128-1-5p 1 0 0
chr19:41426104|41426436 hsa-miR-93-5p 1 0 0
chr19:41426104|41426436 hsa-miR-671-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6825-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6089 1 0 0
chr19:41426104|41426436 hsa-miR-6880-5p 1 0 0
chr19:41426104|41426436 hsa-miR-4655-5p 1 0 0
chr19:41426104|41426436 hsa-miR-197-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6829-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6805-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6810-5p 1 0 0
chr19:41426104|41426436 hsa-miR-4690-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6789-5p 1 0 0
chr19:41426104|41426436 hsa-miR-7156-3p 1 0 0
chr19:41426104|41426436 hsa-miR-3158-5p 1 0 0
chr19:41426104|41426436 hsa-miR-1184 1 0 0
chr19:41426104|41426436 hsa-miR-3191-3p 1 0 0
chr19:41426104|41426436 hsa-miR-4727-3p 1 0 0
chr19:41426104|41426436 hsa-miR-597-3p 1 0 0
chr19:41426104|41426436 hsa-miR-6741-3p 1 0 0
chr19:41426104|41426436 hsa-miR-1233-5p 1 0 0
chr19:41426104|41426436 hsa-miR-4763-3p 1 0 0
chr19:41426104|41426436 hsa-miR-6778-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6787-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6775-5p 1 0 0
chr19:41426104|41426436 hsa-miR-4728-5p 1 0 0
chr19:41426104|41426436 hsa-miR-5196-5p 1 0 0
chr19:41426104|41426436 hsa-miR-4632-5p 1 0 0
chr19:41426104|41426436 hsa-miR-4745-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6795-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6887-5p 1 0 0
chr19:41426104|41426436 hsa-miR-3187-5p 1 0 0
chr19:41426104|41426436 hsa-miR-939-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6511a-5p 1 0 0
chr19:41426104|41426436 hsa-miR-4665-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6750-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6791-5p 1 0 0
chr19:41426104|41426436 hsa-miR-6753-3p 1 0 0
chr19:41426104|41426436 hsa-miR-6762-5p 1 0 0
chr19:41426104|41426436 hsa-miR-10392-3p 1 0 0
chr19:41426104|41426436 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41426104|41426436
ORF Type ORF1
Protein Length 107
Nucleotide Length 321
Protein Sequence MLSAACRSFPQWLPGGGGSQVSSCSDTDVPYLLLAVKSEPGRFAERQAVRETWGSPAPGIRLLFLLGSPVGEAGPDLDSLVAWESRRYSDLLLWDFLDVPFNQTLKD
Nucleotide Sequence TTGCTGTCAGCAGCCTGCCGGAGCTTCCCACAGTGGCTGCCTGGAGGTGGTGGCAGCCAAGTCTCCAGCTGCTCAGATACTGATGTCCCCTACCTGCTGTTGGCCGTCAAGTCAGAACCAGGGCGCTTTGCAGAACGACAGGCCGTGAGAGAGACGTGGGGCAGTCCAGCTCCAGGGATCCGGCTGCTCTTCCTGCTAGGGTCTCCGGTGGGTGAGGCGGGGCCTGACCTAGACTCACTAGTGGCCTGGGAGAGCCGTCGCTACAGTGACCTGCTGCTCTGGGACTTCCTCGACGTCCCATTCAACCAGACGCTCAAAGAC
CircID chr19:41426104|41426436
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MEVVAAKSPAAQILMSPTCCWPSSQNQGALQNDRP
Nucleotide Sequence CTGGAGGTGGTGGCAGCCAAGTCTCCAGCTGCTCAGATACTGATGTCCCCTACCTGCTGTTGGCCGTCAAGTCAGAACCAGGGCGCTTTGCAGAACGACAGGCCGTGA
CircID chr19:41426104|41426436
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence METWLPPPPGSHCGKLRQAADSKKRR
Nucleotide Sequence CTGGAGACTTGGCTGCCACCACCTCCAGGCAGCCACTGTGGGAAGCTCCGGCAGGCTGCTGACAGCAAGAAGCGGCGG
CircID chr19:41426104|41426436
ORF Type ORF4
Protein Length 64
Nucleotide Length 195
Protein Sequence MGRRGSPRAAGHCSDGSPRPLVSLGQAPPHPPETLAGRAAGSLELDCPTSLSRPVVLQSALVLT
Nucleotide Sequence ATGGGACGTCGAGGAAGTCCCAGAGCAGCAGGTCACTGTAGCGACGGCTCTCCCAGGCCACTAGTGAGTCTAGGTCAGGCCCCGCCTCACCCACCGGAGACCCTAGCAGGAAGAGCAGCCGGATCCCTGGAGCTGGACTGCCCCACGTCTCTCTCACGGCCTGTCGTTCTGCAAAGCGCCCTGGTTCTGACTTGA
CircID chr19:41426104|41426436
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MSSWRLGCHHLQAATVGSSGRLLTARSGG
Nucleotide Sequence CTGAGCAGCTGGAGACTTGGCTGCCACCACCTCCAGGCAGCCACTGTGGGAAGCTCCGGCAGGCTGCTGACAGCAAGAAGCGGCGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab