CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41479081|41479284
Strand -
CircType exon
Host Gene ENSG00000267107.5;
Algorism CIRI2;
Sequence CCTGTTCTGAGCAGCGAGCCACCGCATAAGCAGACATGAGACCTCACTCCAGCCAAATAACACTTTATTTTTGTAGTTTCAATGCTTTTCTTCCCCGAGGAAAGGGAGGAGCTCAGGAGAACAGTGTCATCAAAATTTCCTGGTGGTTGTTTAATCACAGCAGCAGAGTAGGTCAGGAAACTCTTCCAGATTACCCTCTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41479081|41479284 hsa-miR-17-5p 0 0 1
chr19:41479081|41479284 hsa-miR-17-3p 0 0 1
chr19:41479081|41479284 hsa-miR-20a-5p 0 0 1
chr19:41479081|41479284 hsa-miR-20a-3p 0 0 1
chr19:41479081|41479284 hsa-miR-93-5p 0 0 1
chr19:41479081|41479284 hsa-miR-93-3p 0 0 1
chr19:41479081|41479284 hsa-miR-106a-5p 0 0 1
chr19:41479081|41479284 hsa-miR-106a-3p 0 0 1
chr19:41479081|41479284 hsa-miR-192-5p 0 0 1
chr19:41479081|41479284 hsa-miR-192-3p 0 0 1
chr19:41479081|41479284 hsa-miR-204-5p 0 0 1
chr19:41479081|41479284 hsa-miR-204-3p 0 0 1
chr19:41479081|41479284 hsa-miR-211-5p 0 0 1
chr19:41479081|41479284 hsa-miR-211-3p 0 0 1
chr19:41479081|41479284 hsa-miR-215-5p 0 0 1
chr19:41479081|41479284 hsa-miR-215-3p 0 0 1
chr19:41479081|41479284 hsa-miR-122-5p 0 0 1
chr19:41479081|41479284 hsa-miR-122-3p 0 0 1
chr19:41479081|41479284 hsa-miR-106b-5p 0 0 1
chr19:41479081|41479284 hsa-miR-106b-3p 0 0 1
chr19:41479081|41479284 hsa-miR-346 0 0 1
chr19:41479081|41479284 hsa-miR-425-5p 0 0 1
chr19:41479081|41479284 hsa-miR-425-3p 0 0 1
chr19:41479081|41479284 hsa-miR-20b-5p 0 0 1
chr19:41479081|41479284 hsa-miR-20b-3p 0 0 1
chr19:41479081|41479284 hsa-miR-519d-5p 0 0 1
chr19:41479081|41479284 hsa-miR-519d-3p 0 0 1
chr19:41479081|41479284 hsa-miR-632 0 1 1
chr19:41479081|41479284 hsa-miR-639 0 0 1
chr19:41479081|41479284 hsa-miR-647 0 0 1
chr19:41479081|41479284 hsa-miR-1238-5p 0 0 1
chr19:41479081|41479284 hsa-miR-1238-3p 0 0 1
chr19:41479081|41479284 hsa-miR-1200 0 1 1
chr19:41479081|41479284 hsa-miR-1208 0 0 1
chr19:41479081|41479284 hsa-miR-1294 0 1 1
chr19:41479081|41479284 hsa-miR-1299 0 0 1
chr19:41479081|41479284 hsa-miR-1283 0 0 1
chr19:41479081|41479284 hsa-miR-542-5p 0 0 1
chr19:41479081|41479284 hsa-miR-142-5p 0 0 1
chr19:41479081|41479284 hsa-miR-654-3p 0 0 1
chr19:41479081|41479284 hsa-miR-767-3p 0 0 1
chr19:41479081|41479284 hsa-miR-875-3p 0 0 1
chr19:41479081|41479284 hsa-miR-7 0 0 1
chr19:41479081|41479284 hsa-miR-720 0 0 1
chr19:41479081|41479284 hsa-miR-3175 0 1 0
chr19:41479081|41479284 hsa-miR-4271 0 1 0
chr19:41479081|41479284 hsa-miR-3652 1 0 0
chr19:41479081|41479284 hsa-miR-4430 1 1 0
chr19:41479081|41479284 hsa-miR-3135b 1 1 0
chr19:41479081|41479284 hsa-miR-4739 1 0 0
chr19:41479081|41479284 hsa-miR-6077 0 1 0
chr19:41479081|41479284 hsa-miR-9986 0 1 0
chr19:41479081|41479284 hsa-miR-6749-3p 0 1 0
chr19:41479081|41479284 hsa-miR-3194-3p 1 0 0
chr19:41479081|41479284 hsa-miR-4474-3p 1 0 0
chr19:41479081|41479284 hsa-miR-432-5p 1 0 0
chr19:41479081|41479284 hsa-miR-7111-3p 0 1 0
chr19:41479081|41479284 hsa-miR-378a-5p 0 1 0
chr19:41479081|41479284 hsa-miR-6878-5p 0 1 0
chr19:41479081|41479284 hsa-miR-4732-3p 0 1 0
chr19:41479081|41479284 hsa-miR-4746-3p 1 0 0
chr19:41479081|41479284 hsa-miR-4763-3p 1 0 0
chr19:41479081|41479284 hsa-miR-6787-5p 1 0 0
chr19:41479081|41479284 hsa-miR-6812-5p 1 0 0
chr19:41479081|41479284 hsa-miR-5001-5p 1 0 0
chr19:41479081|41479284 hsa-miR-6756-5p 1 0 0
chr19:41479081|41479284 hsa-miR-6780b-5p 0 1 0
chr19:41479081|41479284 hsa-miR-4649-5p 1 0 0
chr19:41479081|41479284 hsa-miR-4745-5p 1 0 0
chr19:41479081|41479284 hsa-miR-6858-5p 1 0 0
chr19:41479081|41479284 hsa-miR-4758-5p 1 0 0
chr19:41479081|41479284 hsa-miR-6783-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41479081|41479284
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MLFFPEEREELRRTVSSKFPGGCLITAAE
Nucleotide Sequence ATGCTTTTCTTCCCCGAGGAAAGGGAGGAGCTCAGGAGAACAGTGTCATCAAAATTTCCTGGTGGTTGTTTAATCACAGCAGCAGAGTAG
CircID chr19:41479081|41479284
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MRPHSSQITLYFCSFNAFLPRGKGGAQENSVIKISWWLFNHSSRVGQETLPDYPLP
Nucleotide Sequence ATGAGACCTCACTCCAGCCAAATAACACTTTATTTTTGTAGTTTCAATGCTTTTCTTCCCCGAGGAAAGGGAGGAGCTCAGGAGAACAGTGTCATCAAAATTTCCTGGTGGTTGTTTAATCACAGCAGCAGAGTAGGTCAGGAAACTCTTCCAGATTACCCTCTTCCT
CircID chr19:41479081|41479284
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MTYSAAVIKQPPGNFDDTVLLSSSLSSGKKSIETTKIKCYLAGVRSHVCLCGGSLLRT
Nucleotide Sequence CTGACCTACTCTGCTGCTGTGATTAAACAACCACCAGGAAATTTTGATGACACTGTTCTCCTGAGCTCCTCCCTTTCCTCGGGGAAGAAAAGCATTGAAACTACAAAAATAAAGTGTTATTTGGCTGGAGTGAGGTCTCATGTCTGCTTATGCGGTGGCTCGCTGCTCAGAACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab