CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41708648|41708782
Strand -
CircType exon
Host Gene ENSG00000105388.13;
Algorism CIRI2;
Sequence CAGACAGTCACAGCAGCCTTGACAAAACGTTCCTGGAACTCAAGCTCTTCTCCACAGAGGAGGACAGAGCAGACAGCAGAGACCATGGAGTCTCCCTCGGCCCCTCCCCACAGATGGTGCATCCCCTGGCAGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41708648|41708782 hsa-miR-134-5p 0 0 1
chr19:41708648|41708782 hsa-miR-134-3p 0 0 1
chr19:41708648|41708782 hsa-miR-346 0 0 1
chr19:41708648|41708782 hsa-miR-593-5p 0 0 1
chr19:41708648|41708782 hsa-miR-593-3p 0 0 1
chr19:41708648|41708782 hsa-miR-626 0 0 1
chr19:41708648|41708782 hsa-miR-632 0 0 1
chr19:41708648|41708782 hsa-miR-665 0 0 1
chr19:41708648|41708782 hsa-miR-873-5p 0 0 1
chr19:41708648|41708782 hsa-miR-873-3p 0 0 1
chr19:41708648|41708782 hsa-miR-939-5p 0 0 1
chr19:41708648|41708782 hsa-miR-939-3p 0 0 1
chr19:41708648|41708782 hsa-miR-943 0 0 1
chr19:41708648|41708782 hsa-miR-1253 0 0 1
chr19:41708648|41708782 hsa-miR-491-5p 0 0 1
chr19:41708648|41708782 hsa-miR-767-5p 0 0 1
chr19:41708648|41708782 hsa-miR-423-5p 1 1 1
chr19:41708648|41708782 hsa-miR-767-3p 0 0 1
chr19:41708648|41708782 hsa-miR-502-3p 0 0 1
chr19:41708648|41708782 hsa-miR-501-3p 0 0 1
chr19:41708648|41708782 hsa-miR-1538 1 0 0
chr19:41708648|41708782 hsa-miR-4270 1 0 0
chr19:41708648|41708782 hsa-miR-4450 1 0 0
chr19:41708648|41708782 hsa-miR-4516 0 1 0
chr19:41708648|41708782 hsa-miR-4525 1 0 0
chr19:41708648|41708782 hsa-miR-4531 0 1 0
chr19:41708648|41708782 hsa-miR-4656 1 0 0
chr19:41708648|41708782 hsa-miR-4682 1 1 0
chr19:41708648|41708782 hsa-miR-4706 1 0 0
chr19:41708648|41708782 hsa-miR-5691 0 1 0
chr19:41708648|41708782 hsa-miR-6085 1 1 0
chr19:41708648|41708782 hsa-miR-6734-5p 1 0 0
chr19:41708648|41708782 hsa-miR-1247-3p 1 0 0
chr19:41708648|41708782 hsa-miR-3150a-3p 0 1 0
chr19:41708648|41708782 hsa-miR-6825-5p 1 1 0
chr19:41708648|41708782 hsa-miR-6857-5p 1 0 0
chr19:41708648|41708782 hsa-miR-7114-5p 0 1 0
chr19:41708648|41708782 hsa-miR-7160-5p 1 0 0
chr19:41708648|41708782 hsa-miR-3189-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6742-5p 1 0 0
chr19:41708648|41708782 hsa-miR-1292-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6796-5p 1 1 0
chr19:41708648|41708782 hsa-miR-6732-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6798-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6782-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6728-3p 0 1 0
chr19:41708648|41708782 hsa-miR-6786-5p 1 0 0
chr19:41708648|41708782 hsa-miR-7109-5p 1 0 0
chr19:41708648|41708782 hsa-miR-1229-5p 1 1 0
chr19:41708648|41708782 hsa-miR-6771-5p 1 0 0
chr19:41708648|41708782 hsa-miR-3648 1 0 0
chr19:41708648|41708782 hsa-miR-149-3p 1 1 0
chr19:41708648|41708782 hsa-miR-6824-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6877-5p 1 0 0
chr19:41708648|41708782 hsa-miR-194-3p 1 0 0
chr19:41708648|41708782 hsa-miR-664b-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6828-3p 0 1 0
chr19:41708648|41708782 hsa-miR-2355-3p 0 1 0
chr19:41708648|41708782 hsa-miR-5197-3p 0 1 0
chr19:41708648|41708782 hsa-miR-4763-3p 1 0 0
chr19:41708648|41708782 hsa-miR-6787-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6816-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6775-5p 1 0 0
chr19:41708648|41708782 hsa-miR-1343-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6737-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6752-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6756-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6803-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6813-5p 1 1 0
chr19:41708648|41708782 hsa-miR-6819-5p 1 0 0
chr19:41708648|41708782 hsa-miR-7110-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6751-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6763-5p 1 1 0
chr19:41708648|41708782 hsa-miR-6779-5p 1 0 0
chr19:41708648|41708782 hsa-miR-7111-5p 1 0 0
chr19:41708648|41708782 hsa-miR-4728-5p 1 1 0
chr19:41708648|41708782 hsa-miR-5196-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6780b-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6862-5p 1 0 0
chr19:41708648|41708782 hsa-miR-1909-3p 1 0 0
chr19:41708648|41708782 hsa-miR-328-5p 1 0 0
chr19:41708648|41708782 hsa-miR-4685-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6846-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6848-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6858-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6856-5p 1 0 0
chr19:41708648|41708782 hsa-miR-3184-5p 0 1 0
chr19:41708648|41708782 hsa-miR-342-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6805-3p 0 1 0
chr19:41708648|41708782 hsa-miR-10400-3p 1 0 0
chr19:41708648|41708782 hsa-miR-4756-5p 1 0 0
chr19:41708648|41708782 hsa-miR-6876-3p 1 1 0
chr19:41708648|41708782 hsa-miR-128-2-5p 0 1 0
chr19:41708648|41708782 hsa-miR-6843-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41708648|41708782
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MTKRSWNSSSSPQRRTEQTAETMESPSAPPHRWCIPWQR
Nucleotide Sequence TTGACAAAACGTTCCTGGAACTCAAGCTCTTCTCCACAGAGGAGGACAGAGCAGACAGCAGAGACCATGGAGTCTCCCTCGGCCCCTCCCCACAGATGGTGCATCCCCTGGCAGAGG
CircID chr19:41708648|41708782
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MELKLFSTEEDRADSRDHGVSLGPSPQMVHPLAE
Nucleotide Sequence CTGGAACTCAAGCTCTTCTCCACAGAGGAGGACAGAGCAGACAGCAGAGACCATGGAGTCTCCCTCGGCCCCTCCCCACAGATGGTGCATCCCCTGGCAGAG
CircID chr19:41708648|41708782
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MPGDAPSVGRGRGRLHGLCCLLCPPLWRRA
Nucleotide Sequence CTGCCAGGGGATGCACCATCTGTGGGGAGGGGCCGAGGGAGACTCCATGGTCTCTGCTGTCTGCTCTGTCCTCCTCTGTGGAGAAGAGCTTGA
CircID chr19:41708648|41708782
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MHHLWGGAEGDSMVSAVCSVLLCGEELEFQERFVKAAVTV
Nucleotide Sequence ATGCACCATCTGTGGGGAGGGGCCGAGGGAGACTCCATGGTCTCTGCTGTCTGCTCTGTCCTCCTCTGTGGAGAAGAGCTTGAGTTCCAGGAACGTTTTGTCAAGGCTGCTGTGACTGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab