CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41718192|41718340
Strand +
CircType exon
Host Gene ENSG00000105388.13;
Algorism CIRI2;
Sequence TGGCTGAGTTATTGGCCTGGCAGGTATAGAGTCCGCTGTTCTTCTCAGTGATGTTGGAGATAAAGAGCTCTTGTGTGTGTTGCTGGATGTTCCCATCAATCAGCCAAGAATACTGTGCAGGTGGGTTAGAGGCTGCATGGCAGGAGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41718192|41718340 hsa-miR-144-5p 0 0 1
chr19:41718192|41718340 hsa-miR-144-3p 0 0 1
chr19:41718192|41718340 hsa-miR-335-5p 0 0 1
chr19:41718192|41718340 hsa-miR-335-3p 0 0 1
chr19:41718192|41718340 hsa-miR-630 0 0 1
chr19:41718192|41718340 hsa-miR-647 0 0 1
chr19:41718192|41718340 hsa-miR-1253 0 0 1
chr19:41718192|41718340 hsa-miR-1284 0 0 1
chr19:41718192|41718340 hsa-miR-1292-5p 0 0 1
chr19:41718192|41718340 hsa-miR-1292-3p 0 0 1
chr19:41718192|41718340 hsa-miR-512-5p 0 0 1
chr19:41718192|41718340 hsa-miR-1224-3p 0 0 1
chr19:41718192|41718340 hsa-miR-875-5p 0 0 1
chr19:41718192|41718340 hsa-miR-338-3p 0 0 1
chr19:41718192|41718340 hsa-miR-515-5p 0 0 1
chr19:41718192|41718340 hsa-miR-1300 0 0 1
chr19:41718192|41718340 hsa-miR-499-3p 0 0 1
chr19:41718192|41718340 hsa-miR-1976 0 1 0
chr19:41718192|41718340 hsa-miR-4522 1 0 0
chr19:41718192|41718340 hsa-miR-4530 1 0 0
chr19:41718192|41718340 hsa-miR-6844 0 1 0
chr19:41718192|41718340 hsa-miR-770-5p 1 0 0
chr19:41718192|41718340 hsa-miR-6845-3p 0 1 0
chr19:41718192|41718340 hsa-miR-4793-3p 1 0 0
chr19:41718192|41718340 hsa-miR-5006-5p 0 1 0
chr19:41718192|41718340 hsa-miR-6882-3p 1 0 0
chr19:41718192|41718340 hsa-miR-2277-3p 1 0 0
chr19:41718192|41718340 hsa-miR-7156-3p 0 1 0
chr19:41718192|41718340 hsa-miR-6738-3p 0 1 0
chr19:41718192|41718340 hsa-miR-4750-3p 1 0 0
chr19:41718192|41718340 hsa-miR-4645-3p 0 1 0
chr19:41718192|41718340 hsa-miR-3187-5p 1 0 0
chr19:41718192|41718340 hsa-miR-6856-5p 1 0 0
chr19:41718192|41718340 hsa-miR-6877-3p 0 1 0
chr19:41718192|41718340 hsa-miR-4646-5p 0 1 0
chr19:41718192|41718340 hsa-miR-4722-3p 1 1 0
chr19:41718192|41718340 hsa-miR-6819-3p 1 1 0
chr19:41718192|41718340 hsa-miR-6859-5p 0 1 0
chr19:41718192|41718340 hsa-miR-6817-5p 0 1 0
chr19:41718192|41718340 hsa-miR-3144-3p 0 1 0
chr19:41718192|41718340 hsa-miR-6781-3p 1 0 0
chr19:41718192|41718340 hsa-miR-4769-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr19:41718192|41718340
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MAGIESAVLLSDVGDKELLCVLLDVPINQPRILCRWVRGCMAGE
Nucleotide Sequence CTGGCAGGTATAGAGTCCGCTGTTCTTCTCAGTGATGTTGGAGATAAAGAGCTCTTGTGTGTGTTGCTGGATGTTCCCATCAATCAGCCAAGAATACTGTGCAGGTGGGTTAGAGGCTGCATGGCAGGAGAG

CircID chr19:41718192|41718340
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MFFSVMLEIKSSCVCCWMFPSISQEYCAGGLEAAWQER
Nucleotide Sequence CTGTTCTTCTCAGTGATGTTGGAGATAAAGAGCTCTTGTGTGTGTTGCTGGATGTTCCCATCAATCAGCCAAGAATACTGTGCAGGTGGGTTAGAGGCTGCATGGCAGGAGAGG

CircID chr19:41718192|41718340
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MIDGNIQQHTQELFISNITEKNSGLYTCQANNSA
Nucleotide Sequence CTGATTGATGGGAACATCCAGCAACACACACAAGAGCTCTTTATCTCCAACATCACTGAGAAGAACAGCGGACTCTATACCTGCCAGGCCAATAACTCAGCC

CircID chr19:41718192|41718340
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MMGTSSNTHKSSLSPTSLRRTADSIPARPITQP
Nucleotide Sequence TTGATGGGAACATCCAGCAACACACACAAGAGCTCTTTATCTCCAACATCACTGAGAAGAACAGCGGACTCTATACCTGCCAGGCCAATAACTCAGCCA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites