CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41860805|41861180
Strand -
CircType exon
Host Gene ENSG00000105372.5;
Algorism CIRI2;
Sequence CAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGGACTGAGGTTCAAAACGGGTGGAGGCTGTCGCCTTGGCCTGCCCATCTGAGCCCCAGTGTTTGCCGGTCCCTGGCAGGCGAGGCTTGTTTGGGGCCTCCGTGGCTCCTTTCAGCGTGAGGCCTGGCTTGTGTTCCGGTTCCAGCCTCTCTTTGTACTCTGGGCACAGCATAGTTGTGTTGAGGGGAGGGCATTTGGGATATGGGGTAGTTTGTGGAGATGACTGAATCGTGCTTTTCCCACTGTTTTGGTCTTAGGTCCGGGAAGCTGAAAGTCCCCGAATGGGTGGATACCGTCAAGCTGGCCAAGCACAAAGAGCTTGCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41860805|41861180 hsa-miR-141-5p 0 0 1
chr19:41860805|41861180 hsa-miR-141-3p 0 0 1
chr19:41860805|41861180 hsa-miR-200a-5p 0 0 1
chr19:41860805|41861180 hsa-miR-200a-3p 0 0 1
chr19:41860805|41861180 hsa-miR-370-5p 0 0 1
chr19:41860805|41861180 hsa-miR-370-3p 0 0 1
chr19:41860805|41861180 hsa-miR-488-5p 0 0 1
chr19:41860805|41861180 hsa-miR-488-3p 0 0 1
chr19:41860805|41861180 hsa-miR-588 0 0 1
chr19:41860805|41861180 hsa-miR-636 0 0 1
chr19:41860805|41861180 hsa-miR-660-5p 0 0 1
chr19:41860805|41861180 hsa-miR-660-3p 0 0 1
chr19:41860805|41861180 hsa-miR-1304-5p 0 0 1
chr19:41860805|41861180 hsa-miR-1304-3p 0 0 1
chr19:41860805|41861180 hsa-miR-1224-5p 0 0 1
chr19:41860805|41861180 hsa-miR-542-5p 0 0 1
chr19:41860805|41861180 hsa-miR-485-5p 0 1 1
chr19:41860805|41861180 hsa-miR-524-5p 0 0 1
chr19:41860805|41861180 hsa-miR-455-3p 0 0 1
chr19:41860805|41861180 hsa-miR-520d-5p 0 0 1
chr19:41860805|41861180 hsa-miR-105 0 0 1
chr19:41860805|41861180 hsa-miR-218 0 0 1
chr19:41860805|41861180 hsa-miR-1273 0 0 1
chr19:41860805|41861180 hsa-miR-24 0 0 1
chr19:41860805|41861180 hsa-miR-365 0 0 1
chr19:41860805|41861180 hsa-miR-638 1 0 0
chr19:41860805|41861180 hsa-miR-762 1 1 0
chr19:41860805|41861180 hsa-miR-2113 0 1 0
chr19:41860805|41861180 hsa-miR-4290 0 1 0
chr19:41860805|41861180 hsa-miR-4437 0 1 0
chr19:41860805|41861180 hsa-miR-4476 0 1 0
chr19:41860805|41861180 hsa-miR-4739 1 0 0
chr19:41860805|41861180 hsa-miR-211-3p 0 1 0
chr19:41860805|41861180 hsa-miR-125b-2-3p 1 1 0
chr19:41860805|41861180 hsa-miR-105-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6894-5p 1 0 0
chr19:41860805|41861180 hsa-miR-1972 0 1 0
chr19:41860805|41861180 hsa-miR-3663-3p 1 0 0
chr19:41860805|41861180 hsa-miR-6089 1 0 0
chr19:41860805|41861180 hsa-miR-505-5p 0 1 0
chr19:41860805|41861180 hsa-miR-4755-3p 0 1 0
chr19:41860805|41861180 hsa-miR-24-3p 0 1 0
chr19:41860805|41861180 hsa-miR-6768-5p 1 0 0
chr19:41860805|41861180 hsa-miR-6827-5p 0 1 0
chr19:41860805|41861180 hsa-miR-4733-5p 0 1 0
chr19:41860805|41861180 hsa-miR-7109-3p 0 1 0
chr19:41860805|41861180 hsa-miR-6749-5p 1 1 0
chr19:41860805|41861180 hsa-miR-450a-2-3p 0 1 0
chr19:41860805|41861180 hsa-miR-6866-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6720-3p 0 1 0
chr19:41860805|41861180 hsa-miR-4283 0 1 0
chr19:41860805|41861180 hsa-miR-4766-5p 0 1 0
chr19:41860805|41861180 hsa-miR-3675-3p 0 1 0
chr19:41860805|41861180 hsa-miR-5699-5p 0 1 0
chr19:41860805|41861180 hsa-miR-4802-5p 0 1 0
chr19:41860805|41861180 hsa-miR-4650-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6778-5p 1 0 0
chr19:41860805|41861180 hsa-miR-3620-5p 1 0 0
chr19:41860805|41861180 hsa-miR-6780b-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6848-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6858-5p 0 1 0
chr19:41860805|41861180 hsa-miR-365a-5p 0 1 0
chr19:41860805|41861180 hsa-miR-365b-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6758-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6791-5p 1 0 0
chr19:41860805|41861180 hsa-miR-6762-5p 1 0 0
chr19:41860805|41861180 hsa-miR-4731-3p 0 1 0
chr19:41860805|41861180 hsa-miR-6764-5p 0 1 0
chr19:41860805|41861180 hsa-miR-6806-3p 1 0 0
chr19:41860805|41861180 hsa-miR-6835-3p 0 1 0
chr19:41860805|41861180 hsa-miR-301b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41860805|41861180
ORF Type ORF1
Protein Length 63
Nucleotide Length 192
Protein Sequence MACPSEPQCLPVPGRRGLFGASVAPFSVRPGLCSGSSLSLYSGHSIVVLRGGHLGYGVVCGDD
Nucleotide Sequence TTGGCCTGCCCATCTGAGCCCCAGTGTTTGCCGGTCCCTGGCAGGCGAGGCTTGTTTGGGGCCTCCGTGGCTCCTTTCAGCGTGAGGCCTGGCTTGTGTTCCGGTTCCAGCCTCTCTTTGTACTCTGGGCACAGCATAGTTGTGTTGAGGGGAGGGCATTTGGGATATGGGGTAGTTTGTGGAGATGACTGA
CircID chr19:41860805|41861180
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MGTEVQNGWRLSPWPAHLSPSVCRSLAGEACLGPPWLLSA
Nucleotide Sequence TTGGGGACTGAGGTTCAAAACGGGTGGAGGCTGTCGCCTTGGCCTGCCCATCTGAGCCCCAGTGTTTGCCGGTCCCTGGCAGGCGAGGCTTGTTTGGGGCCTCCGTGGCTCCTTTCAGCGTGA
CircID chr19:41860805|41861180
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MTESCFSHCFGLRSGKLKVPEWVDTVKLAKHKELA
Nucleotide Sequence ATGACTGAATCGTGCTTTTCCCACTGTTTTGGTCTTAGGTCCGGGAAGCTGAAAGTCCCCGAATGGGTGGATACCGTCAAGCTGGCCAAGCACAAAGAGCTTGCT
CircID chr19:41860805|41861180
ORF Type ORF4
Protein Length 100
Nucleotide Length 303
Protein Sequence MCLASLTVSTHSGTFSFPDLRPKQWEKHDSVISTNYPISQMPSPQHNYAVPRVQREAGTGTQARPHAERSHGGPKQASPARDRQTLGLRWAGQGDSLHPF
Nucleotide Sequence TTGTGCTTGGCCAGCTTGACGGTATCCACCCATTCGGGGACTTTCAGCTTCCCGGACCTAAGACCAAAACAGTGGGAAAAGCACGATTCAGTCATCTCCACAAACTACCCCATATCCCAAATGCCCTCCCCTCAACACAACTATGCTGTGCCCAGAGTACAAAGAGAGGCTGGAACCGGAACACAAGCCAGGCCTCACGCTGAAAGGAGCCACGGAGGCCCCAAACAAGCCTCGCCTGCCAGGGACCGGCAAACACTGGGGCTCAGATGGGCAGGCCAAGGCGACAGCCTCCACCCGTTTTGA
CircID chr19:41860805|41861180
ORF Type ORF5
Protein Length 74
Nucleotide Length 222
Protein Sequence MLCPEYKERLEPEHKPGLTLKGATEAPNKPRLPGTGKHWGSDGQAKATASTRFEPQSPNSLFEEGCQSSDELLL
Nucleotide Sequence ATGCTGTGCCCAGAGTACAAAGAGAGGCTGGAACCGGAACACAAGCCAGGCCTCACGCTGAAAGGAGCCACGGAGGCCCCAAACAAGCCTCGCCTGCCAGGGACCGGCAAACACTGGGGCTCAGATGGGCAGGCCAAGGCGACAGCCTCCACCCGTTTTGAACCTCAGTCCCCAAACTCACTTTTTGAGGAAGGCTGCCAGAGCTCTGACGAACTCCTGCTG
CircID chr19:41860805|41861180
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MGRPRRQPPPVLNLSPQTHFLRKAARALTNSC
Nucleotide Sequence ATGGGCAGGCCAAGGCGACAGCCTCCACCCGTTTTGAACCTCAGTCCCCAAACTCACTTTTTGAGGAAGGCTGCCAGAGCTCTGACGAACTCCTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab