CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41895361|41895486
Strand +
CircType exon
Host Gene ENSG00000076928.16;
Algorism CIRI2;
Sequence CTGGTTCCCGGTCTGGGCTGTCCAGGGACAGAGGGTGCAGAGAGACTCCAGGGGTGTCCTGCCCAGGAGCCCCGATATTCCGGTCCCGAGAGGGCATCCCCACGCCTCCCTTCCGGTCTGTAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41895361|41895486 hsa-miR-221-5p 0 0 1
chr19:41895361|41895486 hsa-miR-221-3p 0 0 1
chr19:41895361|41895486 hsa-miR-222-5p 0 0 1
chr19:41895361|41895486 hsa-miR-222-3p 0 0 1
chr19:41895361|41895486 hsa-miR-612 1 1 1
chr19:41895361|41895486 hsa-miR-1286 0 0 1
chr19:41895361|41895486 hsa-miR-1321 0 0 1
chr19:41895361|41895486 hsa-miR-1197 0 0 1
chr19:41895361|41895486 hsa-miR-491-5p 0 1 1
chr19:41895361|41895486 hsa-miR-1289 0 0 1
chr19:41895361|41895486 hsa-miR-331-3p 0 1 1
chr19:41895361|41895486 hsa-miR-1285 0 0 1
chr19:41895361|41895486 hsa-miR-637 1 0 0
chr19:41895361|41895486 hsa-miR-638 1 0 0
chr19:41895361|41895486 hsa-miR-650 1 0 0
chr19:41895361|41895486 hsa-miR-4298 1 0 0
chr19:41895361|41895486 hsa-miR-4308 0 1 0
chr19:41895361|41895486 hsa-miR-4254 0 1 0
chr19:41895361|41895486 hsa-miR-3909 0 1 0
chr19:41895361|41895486 hsa-miR-1268b 1 0 0
chr19:41895361|41895486 hsa-miR-4443 1 0 0
chr19:41895361|41895486 hsa-miR-4488 1 0 0
chr19:41895361|41895486 hsa-miR-4515 1 0 0
chr19:41895361|41895486 hsa-miR-4706 1 0 0
chr19:41895361|41895486 hsa-miR-4739 1 0 0
chr19:41895361|41895486 hsa-miR-4741 1 0 0
chr19:41895361|41895486 hsa-miR-4788 1 1 0
chr19:41895361|41895486 hsa-miR-6860 0 1 0
chr19:41895361|41895486 hsa-miR-8088 1 0 0
chr19:41895361|41895486 hsa-miR-8089 1 0 0
chr19:41895361|41895486 hsa-miR-150-3p 1 0 0
chr19:41895361|41895486 hsa-miR-4433b-3p 1 0 0
chr19:41895361|41895486 hsa-miR-671-5p 1 0 0
chr19:41895361|41895486 hsa-miR-7106-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6825-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6799-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6089 1 0 0
chr19:41895361|41895486 hsa-miR-6727-5p 1 1 0
chr19:41895361|41895486 hsa-miR-6721-5p 0 1 0
chr19:41895361|41895486 hsa-miR-6873-3p 0 1 0
chr19:41895361|41895486 hsa-miR-6817-3p 0 1 0
chr19:41895361|41895486 hsa-miR-1292-5p 1 0 0
chr19:41895361|41895486 hsa-miR-23a-5p 0 1 0
chr19:41895361|41895486 hsa-miR-6782-5p 1 0 0
chr19:41895361|41895486 hsa-miR-1343-3p 0 1 0
chr19:41895361|41895486 hsa-miR-6786-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6853-5p 0 1 0
chr19:41895361|41895486 hsa-miR-6771-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6749-5p 1 0 0
chr19:41895361|41895486 hsa-miR-3202 0 1 0
chr19:41895361|41895486 hsa-miR-4743-5p 1 0 0
chr19:41895361|41895486 hsa-miR-4638-3p 0 1 0
chr19:41895361|41895486 hsa-miR-3690 0 1 0
chr19:41895361|41895486 hsa-miR-149-3p 1 0 0
chr19:41895361|41895486 hsa-miR-6824-5p 1 0 0
chr19:41895361|41895486 hsa-miR-3158-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6781-5p 1 0 0
chr19:41895361|41895486 hsa-miR-1307-5p 1 0 0
chr19:41895361|41895486 hsa-miR-7112-5p 1 0 0
chr19:41895361|41895486 hsa-miR-5000-3p 0 1 0
chr19:41895361|41895486 hsa-miR-2276-5p 0 1 0
chr19:41895361|41895486 hsa-miR-6895-3p 0 1 0
chr19:41895361|41895486 hsa-miR-501-5p 0 1 0
chr19:41895361|41895486 hsa-miR-6865-3p 0 1 0
chr19:41895361|41895486 hsa-miR-1207-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6816-5p 1 0 0
chr19:41895361|41895486 hsa-miR-1343-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6752-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6756-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6803-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6842-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6851-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6774-5p 1 1 0
chr19:41895361|41895486 hsa-miR-328-5p 1 0 0
chr19:41895361|41895486 hsa-miR-4649-5p 1 0 0
chr19:41895361|41895486 hsa-miR-4745-5p 1 0 0
chr19:41895361|41895486 hsa-miR-6883-5p 1 0 0
chr19:41895361|41895486 hsa-miR-3187-5p 0 1 0
chr19:41895361|41895486 hsa-miR-10396a-3p 1 0 0
chr19:41895361|41895486 hsa-miR-4664-5p 0 1 0
chr19:41895361|41895486 hsa-miR-7151-3p 0 1 0
chr19:41895361|41895486 hsa-miR-6785-5p 1 0 0
chr19:41895361|41895486 hsa-miR-4756-5p 0 1 0
chr19:41895361|41895486 hsa-miR-6783-3p 0 1 0
chr19:41895361|41895486 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41895361|41895486
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence LVPGLGCPGTEGAERLQGCPAQEPRYSGPERASPRLPSGL
Nucleotide Sequence CTGGTTCCCGGTCTGGGCTGTCCAGGGACAGAGGGTGCAGAGAGACTCCAGGGGTGTCCTGCCCAGGAGCCCCGATATTCCGGTCCCGAGAGGGCATCCCCACGCCTCCCTTCCGGTCTGTAG
CircID chr19:41895361|41895486
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MSRDRGCRETPGVSCPGAPIFRSREGIPTPPFRSVA
Nucleotide Sequence CTGTCCAGGGACAGAGGGTGCAGAGAGACTCCAGGGGTGTCCTGCCCAGGAGCCCCGATATTCCGGTCCCGAGAGGGCATCCCCACGCCTCCCTTCCGGTCTGTAGCA
CircID chr19:41895361|41895486
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MPSRDRNIGAPGQDTPGVSLHPLSLDSPDREP
Nucleotide Sequence ATGCCCTCTCGGGACCGGAATATCGGGGCTCCTGGGCAGGACACCCCTGGAGTCTCTCTGCACCCTCTGTCCCTGGACAGCCCAGACCGGGAACCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab