CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41904984|41905218
Strand -
CircType exon
Host Gene ENSG00000076928.16;
Algorism CIRI2;
Sequence CAGGAGGCCCAGATATACGAGCTGGTGGCACAGACTGTGTCGGAGCGGAAAAAGTGAGGGGGGGTCTGAGTTCTGAGTGTGGGTGGAGGACGCCCAGGTTTCTGGGTTCCCAGGGACAGGAGGGCTGTGGGGAGGCCCTGGCATAGGGTCTGGGGGCTCTGACTGCCCAGGGATTTGGCCTTTCTCCCCAGCTGGTGTGCTCTCATCACTGAGACTGCCGGATCCCTGAAAGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41904984|41905218 hsa-miR-572 0 0 1
chr19:41904984|41905218 hsa-miR-585-5p 0 0 1
chr19:41904984|41905218 hsa-miR-585-3p 0 0 1
chr19:41904984|41905218 hsa-miR-605-5p 0 0 1
chr19:41904984|41905218 hsa-miR-605-3p 0 0 1
chr19:41904984|41905218 hsa-miR-612 0 1 1
chr19:41904984|41905218 hsa-miR-622 0 0 1
chr19:41904984|41905218 hsa-miR-939-5p 0 0 1
chr19:41904984|41905218 hsa-miR-939-3p 0 0 1
chr19:41904984|41905218 hsa-miR-1226-5p 0 0 1
chr19:41904984|41905218 hsa-miR-1226-3p 0 0 1
chr19:41904984|41905218 hsa-miR-1227-5p 0 0 1
chr19:41904984|41905218 hsa-miR-1227-3p 0 0 1
chr19:41904984|41905218 hsa-miR-1292-5p 0 0 1
chr19:41904984|41905218 hsa-miR-1292-3p 0 0 1
chr19:41904984|41905218 hsa-miR-1225-3p 1 1 1
chr19:41904984|41905218 hsa-miR-490-3p 0 1 1
chr19:41904984|41905218 hsa-miR-361-3p 0 1 1
chr19:41904984|41905218 hsa-miR-1207-3p 0 0 1
chr19:41904984|41905218 hsa-miR-1285 0 0 1
chr19:41904984|41905218 hsa-miR-1268 0 0 1
chr19:41904984|41905218 hsa-miR-661 1 0 0
chr19:41904984|41905218 hsa-miR-940 1 0 0
chr19:41904984|41905218 hsa-miR-1470 1 0 0
chr19:41904984|41905218 hsa-miR-3183 1 0 0
chr19:41904984|41905218 hsa-miR-4292 0 1 0
chr19:41904984|41905218 hsa-miR-4290 0 1 0
chr19:41904984|41905218 hsa-miR-3943 0 1 0
chr19:41904984|41905218 hsa-miR-4469 1 0 0
chr19:41904984|41905218 hsa-miR-4512 0 1 0
chr19:41904984|41905218 hsa-miR-6069 1 0 0
chr19:41904984|41905218 hsa-miR-8089 0 1 0
chr19:41904984|41905218 hsa-miR-12128 0 1 0
chr19:41904984|41905218 hsa-miR-6749-3p 1 0 0
chr19:41904984|41905218 hsa-miR-4700-3p 1 0 0
chr19:41904984|41905218 hsa-miR-6861-5p 0 1 0
chr19:41904984|41905218 hsa-miR-296-5p 0 1 0
chr19:41904984|41905218 hsa-miR-5006-5p 0 1 0
chr19:41904984|41905218 hsa-miR-4763-5p 1 1 0
chr19:41904984|41905218 hsa-miR-4707-3p 1 0 0
chr19:41904984|41905218 hsa-miR-3667-3p 0 1 0
chr19:41904984|41905218 hsa-miR-4713-3p 0 1 0
chr19:41904984|41905218 hsa-miR-1306-5p 1 0 0
chr19:41904984|41905218 hsa-miR-6786-3p 1 0 0
chr19:41904984|41905218 hsa-miR-6878-5p 0 1 0
chr19:41904984|41905218 hsa-miR-6769a-3p 1 0 0
chr19:41904984|41905218 hsa-miR-6889-3p 0 1 0
chr19:41904984|41905218 hsa-miR-4687-5p 1 1 0
chr19:41904984|41905218 hsa-miR-6778-3p 0 1 0
chr19:41904984|41905218 hsa-miR-6826-3p 1 1 0
chr19:41904984|41905218 hsa-miR-6856-3p 0 1 0
chr19:41904984|41905218 hsa-miR-1914-5p 0 1 0
chr19:41904984|41905218 hsa-miR-6795-3p 1 1 0
chr19:41904984|41905218 hsa-miR-6859-3p 1 0 0
chr19:41904984|41905218 hsa-miR-6768-3p 0 1 0
chr19:41904984|41905218 hsa-miR-6748-3p 0 1 0
chr19:41904984|41905218 hsa-miR-3670 1 0 0
chr19:41904984|41905218 hsa-miR-6734-3p 0 1 0
chr19:41904984|41905218 hsa-miR-6846-3p 1 0 0
chr19:41904984|41905218 hsa-miR-6790-3p 1 0 0
chr19:41904984|41905218 hsa-miR-4474-5p 0 1 0
chr19:41904984|41905218 hsa-miR-1343-5p 1 0 0
chr19:41904984|41905218 hsa-miR-6774-5p 0 1 0
chr19:41904984|41905218 hsa-miR-7111-5p 0 1 0
chr19:41904984|41905218 hsa-miR-5189-5p 0 1 0
chr19:41904984|41905218 hsa-miR-10392-5p 1 0 0
chr19:41904984|41905218 hsa-miR-365b-5p 0 1 0
chr19:41904984|41905218 hsa-miR-5008-3p 1 0 0
chr19:41904984|41905218 hsa-miR-4700-5p 0 1 0
chr19:41904984|41905218 hsa-miR-4646-5p 0 1 0
chr19:41904984|41905218 hsa-miR-4667-5p 0 1 0
chr19:41904984|41905218 hsa-miR-6791-5p 0 1 0
chr19:41904984|41905218 hsa-miR-6792-3p 1 1 0
chr19:41904984|41905218 hsa-miR-6862-3p 1 0 0
chr19:41904984|41905218 hsa-miR-7114-3p 1 0 0
chr19:41904984|41905218 hsa-miR-1295b-5p 0 1 0
chr19:41904984|41905218 hsa-miR-99b-3p 1 1 0
chr19:41904984|41905218 hsa-miR-873-5p 0 1 0
chr19:41904984|41905218 hsa-miR-9902 0 1 0
chr19:41904984|41905218 hsa-miR-342-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41904984|41905218
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MSVGGGRPGFWVPRDRRAVGRPWHRVWGL
Nucleotide Sequence CTGAGTGTGGGTGGAGGACGCCCAGGTTTCTGGGTTCCCAGGGACAGGAGGGCTGTGGGGAGGCCCTGGCATAGGGTCTGGGGGCTCTGA
CircID chr19:41904984|41905218
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MWGGPGIGSGGSDCPGIWPFSPAGVLSSLRLPDP
Nucleotide Sequence CTGTGGGGAGGCCCTGGCATAGGGTCTGGGGGCTCTGACTGCCCAGGGATTTGGCCTTTCTCCCCAGCTGGTGTGCTCTCATCACTGAGACTGCCGGATCCCTGA
CircID chr19:41904984|41905218
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MSSECGWRTPRFLGSQGQEGCGEALA
Nucleotide Sequence CTGAGTTCTGAGTGTGGGTGGAGGACGCCCAGGTTTCTGGGTTCCCAGGGACAGGAGGGCTGTGGGGAGGCCCTGGCATAG
CircID chr19:41904984|41905218
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MGVLHPHSELRPPLTFSAPTQSVPPARISGPP
Nucleotide Sequence CTGGGCGTCCTCCACCCACACTCAGAACTCAGACCCCCCCTCACTTTTTCCGCTCCGACACAGTCTGTGCCACCAGCTCGTATATCTGGGCCTCCT
CircID chr19:41904984|41905218
ORF Type ORF5
Protein Length 48
Nucleotide Length 144
Protein Sequence MPGPPHSPPVPGNPETWASSTHTQNSDPPSLFPLRHSLCHQLVYLGLL
Nucleotide Sequence ATGCCAGGGCCTCCCCACAGCCCTCCTGTCCCTGGGAACCCAGAAACCTGGGCGTCCTCCACCCACACTCAGAACTCAGACCCCCCCTCACTTTTTCCGCTCCGACACAGTCTGTGCCACCAGCTCGTATATCTGGGCCTCCTG
CircID chr19:41904984|41905218
ORF Type ORF6
Protein Length 68
Nucleotide Length 204
Protein Sequence MRAHQLGRKAKSLGSQSPQTLCQGLPTALLSLGTQKPGRPPPTLRTQTPPHFFRSDTVCATSSYIWAS
Nucleotide Sequence ATGAGAGCACACCAGCTGGGGAGAAAGGCCAAATCCCTGGGCAGTCAGAGCCCCCAGACCCTATGCCAGGGCCTCCCCACAGCCCTCCTGTCCCTGGGAACCCAGAAACCTGGGCGTCCTCCACCCACACTCAGAACTCAGACCCCCCCTCACTTTTTCCGCTCCGACACAGTCTGTGCCACCAGCTCGTATATCTGGGCCTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab