CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41956698|41956844
Strand -
CircType exon
Host Gene ENSG00000105404.9;
Algorism CIRI2;
Sequence CCATAACAGCTTTATTTTCAAAGGCGGGATCCCTCCCCGGGCTTGTGATGGGACGGCGCTGTGGGCCCGAGCAGCAGAGCCGTGCAGGACAGGCATGGGCAGGGGTGGGGCAGCTGGCCCGGGAGGCCGGCAGGTCCCAGAAGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41956698|41956844 hsa-miR-22-5p 0 0 1
chr19:41956698|41956844 hsa-miR-22-3p 0 0 1
chr19:41956698|41956844 hsa-miR-320a-5p 0 0 1
chr19:41956698|41956844 hsa-miR-320a-3p 0 0 1
chr19:41956698|41956844 hsa-miR-492 0 1 1
chr19:41956698|41956844 hsa-miR-760 0 0 1
chr19:41956698|41956844 hsa-miR-513b-5p 0 0 1
chr19:41956698|41956844 hsa-miR-513b-3p 0 0 1
chr19:41956698|41956844 hsa-miR-423-3p 0 0 1
chr19:41956698|41956844 hsa-miR-324-3p 0 0 1
chr19:41956698|41956844 hsa-miR-320b 0 0 1
chr19:41956698|41956844 hsa-miR-320c 0 0 1
chr19:41956698|41956844 hsa-miR-320d 0 0 1
chr19:41956698|41956844 hsa-miR-1260a 0 1 0
chr19:41956698|41956844 hsa-miR-1913 0 1 0
chr19:41956698|41956844 hsa-miR-3181 1 1 0
chr19:41956698|41956844 hsa-miR-3649 0 1 0
chr19:41956698|41956844 hsa-miR-4641 0 1 0
chr19:41956698|41956844 hsa-miR-6071 0 1 0
chr19:41956698|41956844 hsa-miR-214-5p 0 1 0
chr19:41956698|41956844 hsa-miR-3194-3p 0 1 0
chr19:41956698|41956844 hsa-miR-3189-5p 1 1 0
chr19:41956698|41956844 hsa-miR-1915-5p 1 0 0
chr19:41956698|41956844 hsa-miR-4711-3p 0 1 0
chr19:41956698|41956844 hsa-miR-6882-3p 0 1 0
chr19:41956698|41956844 hsa-miR-939-3p 0 1 0
chr19:41956698|41956844 hsa-miR-4763-5p 0 1 0
chr19:41956698|41956844 hsa-miR-6514-3p 0 1 0
chr19:41956698|41956844 hsa-miR-4713-3p 0 1 0
chr19:41956698|41956844 hsa-miR-339-5p 0 1 0
chr19:41956698|41956844 hsa-miR-4758-3p 0 1 0
chr19:41956698|41956844 hsa-miR-6872-3p 0 1 0
chr19:41956698|41956844 hsa-miR-3177-3p 0 1 0
chr19:41956698|41956844 hsa-miR-4433b-5p 0 1 0
chr19:41956698|41956844 hsa-miR-6797-5p 0 1 0
chr19:41956698|41956844 hsa-miR-1914-3p 0 1 0
chr19:41956698|41956844 hsa-miR-6724-5p 1 0 0
chr19:41956698|41956844 hsa-miR-6893-3p 0 1 0
chr19:41956698|41956844 hsa-miR-769-3p 0 1 0
chr19:41956698|41956844 hsa-miR-6801-3p 0 1 0
chr19:41956698|41956844 hsa-miR-6810-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:41956698|41956844
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MWARAAEPCRTGMGRGGAAGPGGRQVPED
Nucleotide Sequence CTGTGGGCCCGAGCAGCAGAGCCGTGCAGGACAGGCATGGGCAGGGGTGGGGCAGCTGGCCCGGGAGGCCGGCAGGTCCCAGAAGAC
CircID chr19:41956698|41956844
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MGRRCGPEQQSRAGQAWAGVGQLAREAGRSQKT
Nucleotide Sequence ATGGGACGGCGCTGTGGGCCCGAGCAGCAGAGCCGTGCAGGACAGGCATGGGCAGGGGTGGGGCAGCTGGCCCGGGAGGCCGGCAGGTCCCAGAAGACA
CircID chr19:41956698|41956844
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MPMPVLHGSAARAHSAVPSQARGGIPPLKIKLLW
Nucleotide Sequence CTGCCCATGCCTGTCCTGCACGGCTCTGCTGCTCGGGCCCACAGCGCCGTCCCATCACAAGCCCGGGGAGGGATCCCGCCTTTGAAAATAAAGCTGTTATGG
CircID chr19:41956698|41956844
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MGPAGLPGQLPHPCPCLSCTALLLGPTAPSHHKPGEGSRL
Nucleotide Sequence CTGGGACCTGCCGGCCTCCCGGGCCAGCTGCCCCACCCCTGCCCATGCCTGTCCTGCACGGCTCTGCTGCTCGGGCCCACAGCGCCGTCCCATCACAAGCCCGGGGAGGGATCCCGCCTTTGA
CircID chr19:41956698|41956844
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MPASRASCPTPAHACPARLCCSGPQRRPITSPGRDPAFENKAVM
Nucleotide Sequence CTGCCGGCCTCCCGGGCCAGCTGCCCCACCCCTGCCCATGCCTGTCCTGCACGGCTCTGCTGCTCGGGCCCACAGCGCCGTCCCATCACAAGCCCGGGGAGGGATCCCGCCTTTGAAAATAAAGCTGTTATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab