CircRNA Information

General Information
circRNA Basic Information
CircID chr19:41956882|41957113
Strand -
CircType exon
Host Gene ENSG00000105404.9;
Algorism CIRI2;
Sequence AGCCTCAATCTGGTGGAAGGCAGCGTGGGAGCCGATGACCACCAGGGTGGCTCCTGCAGGAAAGCCGGCAGCTCAGGGCCACACTCCTGCACCTGGCTCCCACCATCCACCCCAGCTGCTCAGACCCTGTACTCACCCAGCACCCAGAAGACGGCCGAGCCCGCACCAGCCAGCCAGAAGAAGGGGAAGGAGATGCCTCCAGCCAGAGCATACTGATGCGCTGGGCTCACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:41956882|41957113 hsa-miR-22-5p 0 0 1
chr19:41956882|41957113 hsa-miR-22-3p 0 0 1
chr19:41956882|41957113 hsa-miR-122-5p 0 0 1
chr19:41956882|41957113 hsa-miR-122-3p 0 0 1
chr19:41956882|41957113 hsa-miR-149-5p 0 0 1
chr19:41956882|41957113 hsa-miR-149-3p 0 0 1
chr19:41956882|41957113 hsa-miR-328-5p 0 0 1
chr19:41956882|41957113 hsa-miR-328-3p 0 0 1
chr19:41956882|41957113 hsa-miR-558 0 0 1
chr19:41956882|41957113 hsa-miR-608 1 0 1
chr19:41956882|41957113 hsa-miR-646 0 0 1
chr19:41956882|41957113 hsa-miR-650 0 0 1
chr19:41956882|41957113 hsa-miR-662 0 0 1
chr19:41956882|41957113 hsa-miR-675-5p 0 0 1
chr19:41956882|41957113 hsa-miR-675-3p 0 0 1
chr19:41956882|41957113 hsa-miR-541-5p 0 0 1
chr19:41956882|41957113 hsa-miR-541-3p 0 0 1
chr19:41956882|41957113 hsa-miR-920 1 0 1
chr19:41956882|41957113 hsa-miR-1182 1 0 1
chr19:41956882|41957113 hsa-miR-663b 1 0 1
chr19:41956882|41957113 hsa-miR-1205 0 0 1
chr19:41956882|41957113 hsa-miR-1286 0 0 1
chr19:41956882|41957113 hsa-miR-1291 0 0 1
chr19:41956882|41957113 hsa-miR-1304-5p 0 0 1
chr19:41956882|41957113 hsa-miR-1304-3p 0 0 1
chr19:41956882|41957113 hsa-miR-1248 0 0 1
chr19:41956882|41957113 hsa-miR-1262 0 0 1
chr19:41956882|41957113 hsa-miR-1225-3p 0 0 1
chr19:41956882|41957113 hsa-miR-532-3p 0 0 1
chr19:41956882|41957113 hsa-miR-485-5p 0 0 1
chr19:41956882|41957113 hsa-miR-574-5p 0 0 1
chr19:41956882|41957113 hsa-miR-654-5p 0 0 1
chr19:41956882|41957113 hsa-miR-1207-3p 0 0 1
chr19:41956882|41957113 hsa-miR-876-3p 0 0 1
chr19:41956882|41957113 hsa-miR-342-5p 0 0 1
chr19:41956882|41957113 hsa-miR-125a-5p 0 0 1
chr19:41956882|41957113 hsa-miR-1233 0 0 1
chr19:41956882|41957113 hsa-miR-323-5p 0 0 1
chr19:41956882|41957113 hsa-miR-125b 0 0 1
chr19:41956882|41957113 hsa-miR-644 0 0 1
chr19:41956882|41957113 hsa-miR-138 0 0 1
chr19:41956882|41957113 hsa-miR-623 1 0 0
chr19:41956882|41957113 hsa-miR-637 1 0 0
chr19:41956882|41957113 hsa-miR-762 1 0 0
chr19:41956882|41957113 hsa-miR-4296 1 0 0
chr19:41956882|41957113 hsa-miR-4322 1 0 0
chr19:41956882|41957113 hsa-miR-4259 1 0 0
chr19:41956882|41957113 hsa-miR-4265 1 0 0
chr19:41956882|41957113 hsa-miR-3652 1 0 0
chr19:41956882|41957113 hsa-miR-3665 1 0 0
chr19:41956882|41957113 hsa-miR-3911 1 0 0
chr19:41956882|41957113 hsa-miR-1268b 1 0 0
chr19:41956882|41957113 hsa-miR-4440 1 0 0
chr19:41956882|41957113 hsa-miR-4466 1 0 0
chr19:41956882|41957113 hsa-miR-4479 1 0 0
chr19:41956882|41957113 hsa-miR-4498 1 0 0
chr19:41956882|41957113 hsa-miR-4505 1 0 0
chr19:41956882|41957113 hsa-miR-4507 1 0 0
chr19:41956882|41957113 hsa-miR-1587 1 0 0
chr19:41956882|41957113 hsa-miR-4651 1 0 0
chr19:41956882|41957113 hsa-miR-4710 1 0 0
chr19:41956882|41957113 hsa-miR-4734 1 0 0
chr19:41956882|41957113 hsa-miR-4741 1 0 0
chr19:41956882|41957113 hsa-miR-5090 1 0 0
chr19:41956882|41957113 hsa-miR-5572 1 0 0
chr19:41956882|41957113 hsa-miR-5698 1 0 0
chr19:41956882|41957113 hsa-miR-5787 1 0 0
chr19:41956882|41957113 hsa-miR-6090 1 0 0
chr19:41956882|41957113 hsa-miR-6860 1 0 0
chr19:41956882|41957113 hsa-miR-12119 1 0 0
chr19:41956882|41957113 hsa-miR-138-5p 1 0 0
chr19:41956882|41957113 hsa-miR-4731-5p 1 0 0
chr19:41956882|41957113 hsa-miR-504-3p 1 0 0
chr19:41956882|41957113 hsa-miR-125b-1-3p 1 0 0
chr19:41956882|41957113 hsa-miR-6861-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6894-5p 1 0 0
chr19:41956882|41957113 hsa-miR-4687-3p 1 0 0
chr19:41956882|41957113 hsa-miR-27a-5p 1 0 0
chr19:41956882|41957113 hsa-miR-3064-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6741-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6727-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6842-3p 1 0 0
chr19:41956882|41957113 hsa-miR-6721-5p 1 0 0
chr19:41956882|41957113 hsa-miR-197-5p 1 0 0
chr19:41956882|41957113 hsa-miR-8069 1 0 0
chr19:41956882|41957113 hsa-miR-5589-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6776-5p 1 0 0
chr19:41956882|41957113 hsa-miR-7108-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6742-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6772-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6793-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6796-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6827-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6782-5p 1 0 0
chr19:41956882|41957113 hsa-miR-3944-3p 1 0 0
chr19:41956882|41957113 hsa-miR-1229-5p 1 0 0
chr19:41956882|41957113 hsa-miR-1228-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6823-5p 1 0 0
chr19:41956882|41957113 hsa-miR-3191-5p 1 0 0
chr19:41956882|41957113 hsa-miR-193a-5p 1 0 0
chr19:41956882|41957113 hsa-miR-1225-5p 1 0 0
chr19:41956882|41957113 hsa-miR-1180-3p 1 0 0
chr19:41956882|41957113 hsa-miR-6818-5p 1 0 0
chr19:41956882|41957113 hsa-miR-5088-3p 1 0 0
chr19:41956882|41957113 hsa-miR-431-3p 1 0 0
chr19:41956882|41957113 hsa-miR-1233-5p 1 0 0
chr19:41956882|41957113 hsa-miR-4763-3p 1 0 0
chr19:41956882|41957113 hsa-miR-6769b-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6778-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6787-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6812-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6726-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6737-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6756-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6769a-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6803-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6819-5p 1 0 0
chr19:41956882|41957113 hsa-miR-10401-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6722-3p 1 0 0
chr19:41956882|41957113 hsa-miR-6779-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6879-5p 1 0 0
chr19:41956882|41957113 hsa-miR-3127-3p 1 0 0
chr19:41956882|41957113 hsa-miR-3620-5p 1 0 0
chr19:41956882|41957113 hsa-miR-5189-5p 1 0 0
chr19:41956882|41957113 hsa-miR-4632-5p 1 0 0
chr19:41956882|41957113 hsa-miR-4701-3p 1 0 0
chr19:41956882|41957113 hsa-miR-6846-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6848-5p 1 0 0
chr19:41956882|41957113 hsa-miR-3187-5p 1 0 0
chr19:41956882|41957113 hsa-miR-3940-5p 1 0 0
chr19:41956882|41957113 hsa-miR-6736-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:41956882|41957113
ORF Type ORF1
Protein Length 68
Nucleotide Length 207
Protein Sequence MVEGSVGADDHQGGSCRKAGSSGPHSCTWLPPSTPAAQTLYSPSTQKTAEPAPASQKKGKEMPPARAY
Nucleotide Sequence CTGGTGGAAGGCAGCGTGGGAGCCGATGACCACCAGGGTGGCTCCTGCAGGAAAGCCGGCAGCTCAGGGCCACACTCCTGCACCTGGCTCCCACCATCCACCCCAGCTGCTCAGACCCTGTACTCACCCAGCACCCAGAAGACGGCCGAGCCCGCACCAGCCAGCCAGAAGAAGGGGAAGGAGATGCCTCCAGCCAGAGCATACTGA
CircID chr19:41956882|41957113
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MTTRVAPAGKPAAQGHTPAPGSHHPPQLLRPCTHPAPRRRPSPHQPARRRGRRCLQPEHTDALGSP
Nucleotide Sequence ATGACCACCAGGGTGGCTCCTGCAGGAAAGCCGGCAGCTCAGGGCCACACTCCTGCACCTGGCTCCCACCATCCACCCCAGCTGCTCAGACCCTGTACTCACCCAGCACCCAGAAGACGGCCGAGCCCGCACCAGCCAGCCAGAAGAAGGGGAAGGAGATGCCTCCAGCCAGAGCATACTGATGCGCTGGGCTCACCT
CircID chr19:41956882|41957113
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MQESRQLRATLLHLAPTIHPSCSDPVLTQHPEDGRARTSQPEEGEGDASSQSILMRWAH
Nucleotide Sequence CTGCAGGAAAGCCGGCAGCTCAGGGCCACACTCCTGCACCTGGCTCCCACCATCCACCCCAGCTGCTCAGACCCTGTACTCACCCAGCACCCAGAAGACGGCCGAGCCCGCACCAGCCAGCCAGAAGAAGGGGAAGGAGATGCCTCCAGCCAGAGCATACTGATGCGCTGGGCTCAC
CircID chr19:41956882|41957113
ORF Type ORF4
Protein Length 68
Nucleotide Length 207
Protein Sequence MLWLEASPSPSSGWLVRARPSSGCWVSTGSEQLGWMVGARCRSVALSCRLSCRSHPGGHRLPRCLPPD
Nucleotide Sequence ATGCTCTGGCTGGAGGCATCTCCTTCCCCTTCTTCTGGCTGGCTGGTGCGGGCTCGGCCGTCTTCTGGGTGCTGGGTGAGTACAGGGTCTGAGCAGCTGGGGTGGATGGTGGGAGCCAGGTGCAGGAGTGTGGCCCTGAGCTGCCGGCTTTCCTGCAGGAGCCACCCTGGTGGTCATCGGCTCCCACGCTGCCTTCCACCAGATTGA
CircID chr19:41956882|41957113
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MAGGISFPFFWLAGAGSAVFWVLGEYRV
Nucleotide Sequence CTGGCTGGAGGCATCTCCTTCCCCTTCTTCTGGCTGGCTGGTGCGGGCTCGGCCGTCTTCTGGGTGCTGGGTGAGTACAGGGTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab