CircRNA Information

General Information
circRNA Basic Information
CircID chr19:42093723|42093869
Strand +
CircType exon
Host Gene ENSG00000028277.19;
Algorism CIRI2;
Sequence CTTACCGTTGTCCCAAGCTTCCAGCAGTCTGAGCACAACAGGTCAGGGAGGGCAGAAAATGGTGAGGGGGGACTGGGAGGATGTGGCACAGGCTGGAGCCTGAGGTTCCCAAGTGGCTCTGGGTGTCCATGGGCCTCAAGACTGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:42093723|42093869 hsa-miR-484 1 1 1
chr19:42093723|42093869 hsa-miR-526b-5p 0 0 1
chr19:42093723|42093869 hsa-miR-526b-3p 0 0 1
chr19:42093723|42093869 hsa-miR-631 0 0 1
chr19:42093723|42093869 hsa-miR-766-5p 0 0 1
chr19:42093723|42093869 hsa-miR-766-3p 0 0 1
chr19:42093723|42093869 hsa-miR-1227-5p 0 0 1
chr19:42093723|42093869 hsa-miR-1227-3p 0 0 1
chr19:42093723|42093869 hsa-miR-1287-5p 0 0 1
chr19:42093723|42093869 hsa-miR-1287-3p 0 0 1
chr19:42093723|42093869 hsa-miR-1304-5p 0 0 1
chr19:42093723|42093869 hsa-miR-1304-3p 0 0 1
chr19:42093723|42093869 hsa-miR-1292-5p 0 0 1
chr19:42093723|42093869 hsa-miR-1292-3p 0 0 1
chr19:42093723|42093869 hsa-miR-671-5p 0 0 1
chr19:42093723|42093869 hsa-miR-324-3p 0 0 1
chr19:42093723|42093869 hsa-miR-125a-5p 0 0 1
chr19:42093723|42093869 hsa-miR-1302 0 0 1
chr19:42093723|42093869 hsa-miR-125b 0 0 1
chr19:42093723|42093869 hsa-miR-218 0 0 1
chr19:42093723|42093869 hsa-miR-544 0 0 1
chr19:42093723|42093869 hsa-miR-3122 0 1 0
chr19:42093723|42093869 hsa-miR-3661 1 0 0
chr19:42093723|42093869 hsa-miR-6079 0 1 0
chr19:42093723|42093869 hsa-miR-12126 0 1 0
chr19:42093723|42093869 hsa-miR-6749-3p 1 0 0
chr19:42093723|42093869 hsa-miR-18a-3p 1 0 0
chr19:42093723|42093869 hsa-miR-6747-3p 1 0 0
chr19:42093723|42093869 hsa-miR-4726-3p 1 0 0
chr19:42093723|42093869 hsa-miR-149-5p 1 0 0
chr19:42093723|42093869 hsa-miR-3192-5p 0 1 0
chr19:42093723|42093869 hsa-miR-6849-3p 1 1 0
chr19:42093723|42093869 hsa-miR-5008-5p 0 1 0
chr19:42093723|42093869 hsa-miR-6735-3p 1 0 0
chr19:42093723|42093869 hsa-miR-4707-3p 1 0 0
chr19:42093723|42093869 hsa-miR-3944-3p 1 0 0
chr19:42093723|42093869 hsa-miR-6803-3p 0 1 0
chr19:42093723|42093869 hsa-miR-3614-5p 0 1 0
chr19:42093723|42093869 hsa-miR-4743-3p 0 1 0
chr19:42093723|42093869 hsa-miR-7111-3p 1 1 0
chr19:42093723|42093869 hsa-miR-4638-3p 1 0 0
chr19:42093723|42093869 hsa-miR-5196-3p 1 1 0
chr19:42093723|42093869 hsa-miR-6811-3p 1 1 0
chr19:42093723|42093869 hsa-miR-6889-3p 1 1 0
chr19:42093723|42093869 hsa-miR-4732-3p 1 1 0
chr19:42093723|42093869 hsa-miR-6826-3p 0 1 0
chr19:42093723|42093869 hsa-miR-1914-5p 0 1 0
chr19:42093723|42093869 hsa-miR-328-3p 1 0 0
chr19:42093723|42093869 hsa-miR-1229-3p 1 1 0
chr19:42093723|42093869 hsa-miR-670-5p 0 1 0
chr19:42093723|42093869 hsa-miR-939-5p 1 0 0
chr19:42093723|42093869 hsa-miR-5008-3p 1 0 0
chr19:42093723|42093869 hsa-miR-4722-3p 1 0 0
chr19:42093723|42093869 hsa-miR-6511a-3p 1 1 0
chr19:42093723|42093869 hsa-miR-6792-3p 1 0 0
chr19:42093723|42093869 hsa-miR-10401-3p 1 0 0
chr19:42093723|42093869 hsa-miR-6837-5p 0 1 0
chr19:42093723|42093869 hsa-miR-6511b-3p 0 1 0
chr19:42093723|42093869 hsa-miR-6529-3p 0 1 0
chr19:42093723|42093869 hsa-miR-6769b-3p 1 0 0
chr19:42093723|42093869 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:42093723|42093869
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MGGCGTGWSLRFPSGSGCPWASRLG
Nucleotide Sequence CTGGGAGGATGTGGCACAGGCTGGAGCCTGAGGTTCCCAAGTGGCTCTGGGTGTCCATGGGCCTCAAGACTGGGC
CircID chr19:42093723|42093869
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MSQASSSLSTTGQGGQKMVRGDWEDVAQAGA
Nucleotide Sequence TTGTCCCAAGCTTCCAGCAGTCTGAGCACAACAGGTCAGGGAGGGCAGAAAATGGTGAGGGGGGACTGGGAGGATGTGGCACAGGCTGGAGCCTGA
CircID chr19:42093723|42093869
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MRPMDTQSHLGTSGSSLCHILPVPPHHFLPSLTCCAQTAGSLGQR
Nucleotide Sequence TTGAGGCCCATGGACACCCAGAGCCACTTGGGAACCTCAGGCTCCAGCCTGTGCCACATCCTCCCAGTCCCCCCTCACCATTTTCTGCCCTCCCTGACCTGTTGTGCTCAGACTGCTGGAAGCTTGGGACAACGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab