CircRNA Information

General Information
circRNA Basic Information
CircID chr19:42248905|42249219
Strand -
CircType exon
Host Gene ENSG00000105722.8;
Algorism CIRI2;
Sequence CGCTCTTGTCAGCACCGGCTACGGCCTTCTCCCCAGCTGCCCGCTGCCGGCGTCCGAGTGGGGGCGGCTGGAGCTTAAACTTGAATGGGGAGGAAGAAGAAGAAGAGGATGACGAGGCCGAGGAGGGGACCGGTGGGGTCTCGGGTGCCATGGGCGGCAGCGGGCACTTGTCAGGGCGCTGGGGCTGGGGCACCACCAGCCCAGGGTAGTGCAGGAAGGCGCGGGGGCTGAGGTGGTAGTTGTAGACGCTTTGGGTGTGGGCCTGCAGGTACCGTTTCATGTCCTCAGGGCTGAAGGAGAAGTGGGAGCCTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:42248905|42249219 hsa-miR-26b-5p 0 0 1
chr19:42248905|42249219 hsa-miR-26b-3p 0 0 1
chr19:42248905|42249219 hsa-miR-10a-5p 0 0 1
chr19:42248905|42249219 hsa-miR-10a-3p 0 0 1
chr19:42248905|42249219 hsa-miR-10b-5p 0 0 1
chr19:42248905|42249219 hsa-miR-10b-3p 0 0 1
chr19:42248905|42249219 hsa-miR-183-5p 0 0 1
chr19:42248905|42249219 hsa-miR-183-3p 0 0 1
chr19:42248905|42249219 hsa-miR-205-5p 0 0 1
chr19:42248905|42249219 hsa-miR-205-3p 0 0 1
chr19:42248905|42249219 hsa-miR-335-5p 0 0 1
chr19:42248905|42249219 hsa-miR-335-3p 0 0 1
chr19:42248905|42249219 hsa-miR-553 0 0 1
chr19:42248905|42249219 hsa-miR-766-5p 0 0 1
chr19:42248905|42249219 hsa-miR-766-3p 0 0 1
chr19:42248905|42249219 hsa-miR-939-5p 0 0 1
chr19:42248905|42249219 hsa-miR-939-3p 0 0 1
chr19:42248905|42249219 hsa-miR-1234-3p 0 0 1
chr19:42248905|42249219 hsa-miR-1205 0 0 1
chr19:42248905|42249219 hsa-miR-1297 0 0 1
chr19:42248905|42249219 hsa-miR-1250-5p 0 0 1
chr19:42248905|42249219 hsa-miR-1250-3p 0 0 1
chr19:42248905|42249219 hsa-miR-1234 0 0 1
chr19:42248905|42249219 hsa-miR-1224-5p 0 1 1
chr19:42248905|42249219 hsa-miR-532-3p 0 1 1
chr19:42248905|42249219 hsa-miR-1283 0 0 1
chr19:42248905|42249219 hsa-miR-885-3p 0 1 1
chr19:42248905|42249219 hsa-miR-1207-3p 0 0 1
chr19:42248905|42249219 hsa-miR-876-3p 0 0 1
chr19:42248905|42249219 hsa-miR-628-5p 0 0 1
chr19:42248905|42249219 hsa-miR-125a-5p 0 0 1
chr19:42248905|42249219 hsa-miR-1280 0 0 1
chr19:42248905|42249219 hsa-miR-323-5p 0 0 1
chr19:42248905|42249219 hsa-miR-125b 0 0 1
chr19:42248905|42249219 hsa-miR-138 0 0 1
chr19:42248905|42249219 hsa-miR-26a 0 0 1
chr19:42248905|42249219 hsa-miR-650 1 0 0
chr19:42248905|42249219 hsa-miR-1204 1 0 0
chr19:42248905|42249219 hsa-miR-1248 0 1 0
chr19:42248905|42249219 hsa-miR-718 1 0 0
chr19:42248905|42249219 hsa-miR-544b 0 1 0
chr19:42248905|42249219 hsa-miR-4297 0 1 0
chr19:42248905|42249219 hsa-miR-4323 0 1 0
chr19:42248905|42249219 hsa-miR-4275 0 1 0
chr19:42248905|42249219 hsa-miR-4279 1 0 0
chr19:42248905|42249219 hsa-miR-4292 0 1 0
chr19:42248905|42249219 hsa-miR-3943 0 1 0
chr19:42248905|42249219 hsa-miR-378g 0 1 0
chr19:42248905|42249219 hsa-miR-4641 0 1 0
chr19:42248905|42249219 hsa-miR-4734 1 0 0
chr19:42248905|42249219 hsa-miR-4767 1 0 0
chr19:42248905|42249219 hsa-miR-5193 1 1 0
chr19:42248905|42249219 hsa-miR-5690 0 1 0
chr19:42248905|42249219 hsa-miR-7976 0 1 0
chr19:42248905|42249219 hsa-miR-8089 0 1 0
chr19:42248905|42249219 hsa-miR-9718 0 1 0
chr19:42248905|42249219 hsa-miR-12116 1 0 0
chr19:42248905|42249219 hsa-miR-138-5p 0 1 0
chr19:42248905|42249219 hsa-miR-6749-3p 1 0 0
chr19:42248905|42249219 hsa-miR-4665-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6836-3p 1 0 0
chr19:42248905|42249219 hsa-miR-3150a-3p 0 1 0
chr19:42248905|42249219 hsa-miR-6861-5p 1 0 0
chr19:42248905|42249219 hsa-miR-6720-5p 1 1 0
chr19:42248905|42249219 hsa-miR-210-5p 1 0 0
chr19:42248905|42249219 hsa-miR-6881-3p 1 1 0
chr19:42248905|42249219 hsa-miR-6089 1 0 0
chr19:42248905|42249219 hsa-miR-6746-5p 0 1 0
chr19:42248905|42249219 hsa-miR-6875-3p 1 1 0
chr19:42248905|42249219 hsa-miR-6787-3p 0 1 0
chr19:42248905|42249219 hsa-miR-877-3p 1 1 0
chr19:42248905|42249219 hsa-miR-2467-5p 1 1 0
chr19:42248905|42249219 hsa-miR-4793-3p 0 1 0
chr19:42248905|42249219 hsa-miR-6728-3p 1 0 0
chr19:42248905|42249219 hsa-miR-4436b-5p 1 1 0
chr19:42248905|42249219 hsa-miR-6763-3p 1 0 0
chr19:42248905|42249219 hsa-miR-4707-3p 1 0 0
chr19:42248905|42249219 hsa-miR-30c-2-3p 0 1 0
chr19:42248905|42249219 hsa-miR-3667-3p 0 1 0
chr19:42248905|42249219 hsa-miR-4783-5p 1 0 0
chr19:42248905|42249219 hsa-miR-6878-3p 1 1 0
chr19:42248905|42249219 hsa-miR-6809-3p 1 1 0
chr19:42248905|42249219 hsa-miR-7111-3p 1 1 0
chr19:42248905|42249219 hsa-miR-5196-3p 1 1 0
chr19:42248905|42249219 hsa-miR-6878-5p 0 1 0
chr19:42248905|42249219 hsa-miR-4707-5p 1 0 0
chr19:42248905|42249219 hsa-miR-6813-3p 1 0 0
chr19:42248905|42249219 hsa-miR-4732-3p 0 1 0
chr19:42248905|42249219 hsa-miR-4778-3p 0 1 0
chr19:42248905|42249219 hsa-miR-6887-3p 1 1 0
chr19:42248905|42249219 hsa-miR-4632-3p 0 1 0
chr19:42248905|42249219 hsa-miR-6746-3p 0 1 0
chr19:42248905|42249219 hsa-miR-6826-3p 0 1 0
chr19:42248905|42249219 hsa-miR-6738-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6795-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6880-3p 1 1 0
chr19:42248905|42249219 hsa-miR-4433b-5p 0 1 0
chr19:42248905|42249219 hsa-miR-6789-3p 1 1 0
chr19:42248905|42249219 hsa-miR-6780b-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6800-3p 1 0 0
chr19:42248905|42249219 hsa-miR-3162-3p 0 1 0
chr19:42248905|42249219 hsa-miR-1228-3p 1 0 0
chr19:42248905|42249219 hsa-miR-3156-3p 0 1 0
chr19:42248905|42249219 hsa-miR-4740-3p 0 1 0
chr19:42248905|42249219 hsa-miR-4738-5p 0 1 0
chr19:42248905|42249219 hsa-miR-6763-5p 0 1 0
chr19:42248905|42249219 hsa-miR-3620-5p 0 1 0
chr19:42248905|42249219 hsa-miR-6885-5p 1 0 0
chr19:42248905|42249219 hsa-miR-10396a-3p 1 0 0
chr19:42248905|42249219 hsa-miR-10396b-3p 1 0 0
chr19:42248905|42249219 hsa-miR-4700-5p 0 1 0
chr19:42248905|42249219 hsa-miR-324-3p 1 0 0
chr19:42248905|42249219 hsa-miR-4667-5p 0 1 0
chr19:42248905|42249219 hsa-miR-10398-5p 1 1 0
chr19:42248905|42249219 hsa-miR-6791-5p 0 1 0
chr19:42248905|42249219 hsa-miR-6727-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6756-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6792-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6810-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6829-3p 1 0 0
chr19:42248905|42249219 hsa-miR-10400-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6775-3p 1 0 0
chr19:42248905|42249219 hsa-miR-10392-3p 1 0 0
chr19:42248905|42249219 hsa-miR-3059-5p 1 0 0
chr19:42248905|42249219 hsa-miR-3622a-3p 0 1 0
chr19:42248905|42249219 hsa-miR-6512-3p 0 1 0
chr19:42248905|42249219 hsa-miR-4756-5p 0 1 0
chr19:42248905|42249219 hsa-miR-6744-3p 1 0 0
chr19:42248905|42249219 hsa-miR-6783-3p 1 0 0
chr19:42248905|42249219 hsa-miR-10394-5p 0 1 0
chr19:42248905|42249219 hsa-miR-3622b-3p 1 1 0
chr19:42248905|42249219 hsa-miR-6811-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:42248905|42249219
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MGRKKKKRMTRPRRGPVGSRVPWAAAGTCQGAGAGAPPAQGSAGRRGG
Nucleotide Sequence ATGGGGAGGAAGAAGAAGAAGAGGATGACGAGGCCGAGGAGGGGACCGGTGGGGTCTCGGGTGCCATGGGCGGCAGCGGGCACTTGTCAGGGCGCTGGGGCTGGGGCACCACCAGCCCAGGGTAGTGCAGGAAGGCGCGGGGGCTGA
CircID chr19:42248905|42249219
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MGLGHHQPRVVQEGAGAEVVVVDALGVGLQVPFHVLRAEGEVGAS
Nucleotide Sequence CTGGGGCTGGGGCACCACCAGCCCAGGGTAGTGCAGGAAGGCGCGGGGGCTGAGGTGGTAGTTGTAGACGCTTTGGGTGTGGGCCTGCAGGTACCGTTTCATGTCCTCAGGGCTGAAGGAGAAGTGGGAGCCTCC
CircID chr19:42248905|42249219
ORF Type ORF3
Protein Length 67
Nucleotide Length 204
Protein Sequence MSAPATAFSPAARCRRPSGGGWSLNLNGEEEEEEDDEAEEGTGGVSGAMGGSGHLSGRWGWGTTSPG
Nucleotide Sequence TTGTCAGCACCGGCTACGGCCTTCTCCCCAGCTGCCCGCTGCCGGCGTCCGAGTGGGGGCGGCTGGAGCTTAAACTTGAATGGGGAGGAAGAAGAAGAAGAGGATGACGAGGCCGAGGAGGGGACCGGTGGGGTCTCGGGTGCCATGGGCGGCAGCGGGCACTTGTCAGGGCGCTGGGGCTGGGGCACCACCAGCCCAGGGTAG
CircID chr19:42248905|42249219
ORF Type ORF4
Protein Length 61
Nucleotide Length 186
Protein Sequence MGWWCPSPSALTSARCRPWHPRPHRSPPRPRHPLLLLPPHSSLSSSRPHSDAGSGQLGRRP
Nucleotide Sequence CTGGGCTGGTGGTGCCCCAGCCCCAGCGCCCTGACAAGTGCCCGCTGCCGCCCATGGCACCCGAGACCCCACCGGTCCCCTCCTCGGCCTCGTCATCCTCTTCTTCTTCTTCCTCCCCATTCAAGTTTAAGCTCCAGCCGCCCCCACTCGGACGCCGGCAGCGGGCAGCTGGGGAGAAGGCCGTAG
CircID chr19:42248905|42249219
ORF Type ORF5
Protein Length 93
Nucleotide Length 279
Protein Sequence MKRYLQAHTQSVYNYHLSPRAFLHYPGLVVPQPQRPDKCPLPPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKS
Nucleotide Sequence ATGAAACGGTACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAGCCCCCGCGCCTTCCTGCACTACCCTGGGCTGGTGGTGCCCCAGCCCCAGCGCCCTGACAAGTGCCCGCTGCCGCCCATGGCACCCGAGACCCCACCGGTCCCCTCCTCGGCCTCGTCATCCTCTTCTTCTTCTTCCTCCCCATTCAAGTTTAAGCTCCAGCCGCCCCCACTCGGACGCCGGCAGCGGGCAGCTGGGGAGAAGGCCGTAGCCGGTGCTGACAAGAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab