CircRNA Information

General Information
circRNA Basic Information
CircID chr19:42287641|42287969
Strand -
CircType exon
Host Gene ENSG00000079432.6;
Algorism CIRI2;
Sequence AACCGGACCGTCAGCAAGATCCTGGGCGAGTGGTGGTATGCCCTGGGGCCCAAGGAGAAGCAGAAGTACCACGACCTGGCCTTCCAGGTAACGCTGTTGCCTCTTGGCTCCTCCCAGCTTCTTCTGGTGGGGTGGGTGAGTGAAGGGTTGCCCTGCCCTCTCCTGCCAGGTGAAGGAGGCCCACTTCAAGGCCCACCCAGATTGGAAGTGGTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACGAGCCTGGGGCTGGCAGGAGGGCACAAGGAGACGCGGGAGCGGAGCATGTCGGAGACGGGCACTGCTGCTGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:42287641|42287969 hsa-miR-15a-5p 0 0 1
chr19:42287641|42287969 hsa-miR-15a-3p 0 0 1
chr19:42287641|42287969 hsa-miR-205-5p 0 0 1
chr19:42287641|42287969 hsa-miR-205-3p 0 0 1
chr19:42287641|42287969 hsa-miR-15b-5p 0 0 1
chr19:42287641|42287969 hsa-miR-15b-3p 0 0 1
chr19:42287641|42287969 hsa-miR-195-5p 0 0 1
chr19:42287641|42287969 hsa-miR-195-3p 0 0 1
chr19:42287641|42287969 hsa-miR-422a 0 0 1
chr19:42287641|42287969 hsa-miR-424-5p 0 0 1
chr19:42287641|42287969 hsa-miR-424-3p 0 0 1
chr19:42287641|42287969 hsa-miR-412-5p 0 0 1
chr19:42287641|42287969 hsa-miR-412-3p 0 0 1
chr19:42287641|42287969 hsa-miR-484 0 0 1
chr19:42287641|42287969 hsa-miR-497-5p 0 0 1
chr19:42287641|42287969 hsa-miR-497-3p 0 0 1
chr19:42287641|42287969 hsa-miR-558 0 0 1
chr19:42287641|42287969 hsa-miR-572 0 0 1
chr19:42287641|42287969 hsa-miR-573 0 0 1
chr19:42287641|42287969 hsa-miR-619-5p 0 0 1
chr19:42287641|42287969 hsa-miR-619-3p 0 0 1
chr19:42287641|42287969 hsa-miR-635 0 0 1
chr19:42287641|42287969 hsa-miR-765 0 1 1
chr19:42287641|42287969 hsa-miR-541-5p 0 0 1
chr19:42287641|42287969 hsa-miR-541-3p 0 0 1
chr19:42287641|42287969 hsa-miR-1202 0 1 1
chr19:42287641|42287969 hsa-miR-1293 0 0 1
chr19:42287641|42287969 hsa-miR-296-5p 0 0 1
chr19:42287641|42287969 hsa-miR-767-5p 0 0 1
chr19:42287641|42287969 hsa-miR-654-5p 0 0 1
chr19:42287641|42287969 hsa-miR-671-3p 0 0 1
chr19:42287641|42287969 hsa-miR-628-5p 0 0 1
chr19:42287641|42287969 hsa-miR-1207-5p 1 0 1
chr19:42287641|42287969 hsa-miR-16 0 0 1
chr19:42287641|42287969 hsa-miR-378 0 0 1
chr19:42287641|42287969 hsa-miR-612 1 0 0
chr19:42287641|42287969 hsa-miR-665 1 0 0
chr19:42287641|42287969 hsa-miR-940 1 0 0
chr19:42287641|42287969 hsa-miR-1538 1 0 0
chr19:42287641|42287969 hsa-miR-1976 0 1 0
chr19:42287641|42287969 hsa-miR-2861 1 0 0
chr19:42287641|42287969 hsa-miR-3125 0 1 0
chr19:42287641|42287969 hsa-miR-320e 0 1 0
chr19:42287641|42287969 hsa-miR-4303 0 1 0
chr19:42287641|42287969 hsa-miR-4290 0 1 0
chr19:42287641|42287969 hsa-miR-4440 0 1 0
chr19:42287641|42287969 hsa-miR-4512 1 0 0
chr19:42287641|42287969 hsa-miR-4538 0 1 0
chr19:42287641|42287969 hsa-miR-3972 1 1 0
chr19:42287641|42287969 hsa-miR-4651 1 0 0
chr19:42287641|42287969 hsa-miR-4688 1 1 0
chr19:42287641|42287969 hsa-miR-4739 1 0 0
chr19:42287641|42287969 hsa-miR-7150 0 1 0
chr19:42287641|42287969 hsa-miR-8073 0 1 0
chr19:42287641|42287969 hsa-miR-6840-3p 1 1 0
chr19:42287641|42287969 hsa-miR-6894-5p 1 0 0
chr19:42287641|42287969 hsa-miR-7851-3p 0 1 0
chr19:42287641|42287969 hsa-miR-6089 1 0 0
chr19:42287641|42287969 hsa-miR-3192-5p 0 1 0
chr19:42287641|42287969 hsa-miR-4722-5p 0 1 0
chr19:42287641|42287969 hsa-miR-505-5p 0 1 0
chr19:42287641|42287969 hsa-miR-874-5p 1 1 0
chr19:42287641|42287969 hsa-miR-4761-3p 1 1 0
chr19:42287641|42287969 hsa-miR-6796-5p 1 0 0
chr19:42287641|42287969 hsa-miR-6765-3p 1 1 0
chr19:42287641|42287969 hsa-miR-3194-5p 1 1 0
chr19:42287641|42287969 hsa-miR-6858-3p 1 0 0
chr19:42287641|42287969 hsa-miR-6771-5p 1 0 0
chr19:42287641|42287969 hsa-miR-3677-3p 0 1 0
chr19:42287641|42287969 hsa-miR-3648 1 0 0
chr19:42287641|42287969 hsa-miR-4667-3p 0 1 0
chr19:42287641|42287969 hsa-miR-3189-3p 0 1 0
chr19:42287641|42287969 hsa-miR-7112-5p 1 1 0
chr19:42287641|42287969 hsa-miR-4687-5p 1 1 0
chr19:42287641|42287969 hsa-miR-3158-3p 1 0 0
chr19:42287641|42287969 hsa-miR-6828-3p 1 0 0
chr19:42287641|42287969 hsa-miR-4758-3p 1 0 0
chr19:42287641|42287969 hsa-miR-1180-5p 0 1 0
chr19:42287641|42287969 hsa-miR-6868-5p 0 1 0
chr19:42287641|42287969 hsa-miR-6886-3p 1 0 0
chr19:42287641|42287969 hsa-miR-6515-3p 0 1 0
chr19:42287641|42287969 hsa-miR-1233-5p 1 0 0
chr19:42287641|42287969 hsa-miR-1273h-5p 1 1 0
chr19:42287641|42287969 hsa-miR-4763-3p 1 0 0
chr19:42287641|42287969 hsa-miR-6778-5p 1 1 0
chr19:42287641|42287969 hsa-miR-6812-5p 1 0 0
chr19:42287641|42287969 hsa-miR-6756-5p 1 1 0
chr19:42287641|42287969 hsa-miR-6774-5p 0 1 0
chr19:42287641|42287969 hsa-miR-6779-5p 1 1 0
chr19:42287641|42287969 hsa-miR-6879-5p 0 1 0
chr19:42287641|42287969 hsa-miR-6754-3p 0 1 0
chr19:42287641|42287969 hsa-miR-1915-3p 1 0 0
chr19:42287641|42287969 hsa-miR-3620-5p 1 0 0
chr19:42287641|42287969 hsa-miR-4728-5p 1 1 0
chr19:42287641|42287969 hsa-miR-4745-5p 1 0 0
chr19:42287641|42287969 hsa-miR-4723-5p 1 1 0
chr19:42287641|42287969 hsa-miR-939-5p 1 0 0
chr19:42287641|42287969 hsa-miR-10396a-3p 1 0 0
chr19:42287641|42287969 hsa-miR-10396b-3p 1 0 0
chr19:42287641|42287969 hsa-miR-6773-5p 0 1 0
chr19:42287641|42287969 hsa-miR-7843-5p 0 1 0
chr19:42287641|42287969 hsa-miR-6791-3p 0 1 0
chr19:42287641|42287969 hsa-miR-6724-5p 1 1 0
chr19:42287641|42287969 hsa-miR-4722-3p 0 1 0
chr19:42287641|42287969 hsa-miR-6727-3p 0 1 0
chr19:42287641|42287969 hsa-miR-4757-5p 0 1 0
chr19:42287641|42287969 hsa-miR-6784-3p 0 1 0
chr19:42287641|42287969 hsa-miR-6862-3p 0 1 0
chr19:42287641|42287969 hsa-miR-5009-5p 0 1 0
chr19:42287641|42287969 hsa-miR-6805-3p 1 1 0
chr19:42287641|42287969 hsa-miR-6829-3p 0 1 0
chr19:42287641|42287969 hsa-miR-6764-5p 1 1 0
chr19:42287641|42287969 hsa-miR-6827-3p 0 1 0
chr19:42287641|42287969 hsa-miR-6838-5p 0 1 0
chr19:42287641|42287969 hsa-miR-4524a-5p 0 1 0
chr19:42287641|42287969 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:42287641|42287969
ORF Type ORF1
Protein Length 102
Nucleotide Length 306
Protein Sequence MGEWWYALGPKEKQKYHDLAFQVTLLPLGSSQLLLVGWVSEGLPCPLLPGEGGPLQGPPRLEVVQQGPKEVQLRGQAHEPGAGRRAQGDAGAEHVGDGHCCC
Nucleotide Sequence CTGGGCGAGTGGTGGTATGCCCTGGGGCCCAAGGAGAAGCAGAAGTACCACGACCTGGCCTTCCAGGTAACGCTGTTGCCTCTTGGCTCCTCCCAGCTTCTTCTGGTGGGGTGGGTGAGTGAAGGGTTGCCCTGCCCTCTCCTGCCAGGTGAAGGAGGCCCACTTCAAGGCCCACCCAGATTGGAAGTGGTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACGAGCCTGGGGCTGGCAGGAGGGCACAAGGAGACGCGGGAGCGGAGCATGTCGGAGACGGGCACTGCTGCTGC
CircID chr19:42287641|42287969
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MPAPGSWAWPLSWTSFGPCCTTSNLGGP
Nucleotide Sequence CTGCCAGCCCCAGGCTCGTGGGCTTGGCCTCTGAGCTGGACTTCTTTCGGTCCTTGTTGCACCACTTCCAATCTGGGTGGGCCTTGA
CircID chr19:42287641|42287969
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MAGEGRATLHSPTPPEEAGRSQEATALPGRPGRGTSASPWAPGHTTTRPGSC
Nucleotide Sequence CTGGCAGGAGAGGGCAGGGCAACCCTTCACTCACCCACCCCACCAGAAGAAGCTGGGAGGAGCCAAGAGGCAACAGCGTTACCTGGAAGGCCAGGTCGTGGTACTTCTGCTTCTCCTTGGGCCCCAGGGCATACCACCACTCGCCCAGGATCTTGCTGA
CircID chr19:42287641|42287969
ORF Type ORF4
Protein Length 101
Nucleotide Length 303
Protein Sequence MLRSRVSLCPPASPRLVGLASELDFFRSLLHHFQSGWALKWASFTWQERAGQPFTHPPHQKKLGGAKRQQRYLEGQVVVLLLLLGPQGIPPLAQDLADGPV
Nucleotide Sequence ATGCTCCGCTCCCGCGTCTCCTTGTGCCCTCCTGCCAGCCCCAGGCTCGTGGGCTTGGCCTCTGAGCTGGACTTCTTTCGGTCCTTGTTGCACCACTTCCAATCTGGGTGGGCCTTGAAGTGGGCCTCCTTCACCTGGCAGGAGAGGGCAGGGCAACCCTTCACTCACCCACCCCACCAGAAGAAGCTGGGAGGAGCCAAGAGGCAACAGCGTTACCTGGAAGGCCAGGTCGTGGTACTTCTGCTTCTCCTTGGGCCCCAGGGCATACCACCACTCGCCCAGGATCTTGCTGACGGTCCGGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab