CircRNA Information

General Information
circRNA Basic Information
CircID chr19:42508894|42509169
Strand +
CircType exon
Host Gene ENSG00000079385.20;
Algorism CIRI2;
Sequence TTCAGCCTCCCCATCCCTAACAGCCACAGAAATAATTTATTCAGAAGTAAAAAAGCAGTAATGAAACCTGTCCTGCTCACTGCAGTGCTGATGTATTTCAAGTCTCTCACCCTCATCACTAGGAGATTCCTTTCCCCTGTAGGGGTAGAGGGGTGGGGACAGAAACAACTTTCTCCTACTCTTCCTTCCTAATAGGCATCTCCAGGCTGCCTGGTCACTGCCCCTCTCTCAGTGTCAATAGATGAAAGTACATTGGGAGTCTGTAGGAAACCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:42508894|42509169 hsa-miR-34a-5p 0 0 1
chr19:42508894|42509169 hsa-miR-34a-3p 0 0 1
chr19:42508894|42509169 hsa-miR-150-5p 0 0 1
chr19:42508894|42509169 hsa-miR-150-3p 0 0 1
chr19:42508894|42509169 hsa-miR-382-5p 0 0 1
chr19:42508894|42509169 hsa-miR-382-3p 0 0 1
chr19:42508894|42509169 hsa-miR-384 0 0 1
chr19:42508894|42509169 hsa-miR-449a 0 1 1
chr19:42508894|42509169 hsa-miR-620 0 0 1
chr19:42508894|42509169 hsa-miR-629-5p 0 0 1
chr19:42508894|42509169 hsa-miR-629-3p 0 0 1
chr19:42508894|42509169 hsa-miR-449b-5p 0 0 1
chr19:42508894|42509169 hsa-miR-449b-3p 0 0 1
chr19:42508894|42509169 hsa-miR-939-5p 0 0 1
chr19:42508894|42509169 hsa-miR-939-3p 0 0 1
chr19:42508894|42509169 hsa-miR-944 0 0 1
chr19:42508894|42509169 hsa-miR-1286 0 0 1
chr19:42508894|42509169 hsa-miR-1258 0 0 1
chr19:42508894|42509169 hsa-miR-1270 0 0 1
chr19:42508894|42509169 hsa-miR-1252-5p 0 0 1
chr19:42508894|42509169 hsa-miR-1252-3p 0 0 1
chr19:42508894|42509169 hsa-miR-486-3p 0 0 1
chr19:42508894|42509169 hsa-miR-485-5p 0 0 1
chr19:42508894|42509169 hsa-miR-423-5p 0 1 1
chr19:42508894|42509169 hsa-miR-34c-5p 0 1 1
chr19:42508894|42509169 hsa-miR-509-3-5p 0 0 1
chr19:42508894|42509169 hsa-miR-509-5p 0 1 1
chr19:42508894|42509169 hsa-miR-514 0 0 1
chr19:42508894|42509169 hsa-miR-1254 0 0 1
chr19:42508894|42509169 hsa-miR-203 0 0 1
chr19:42508894|42509169 hsa-miR-1245 0 0 1
chr19:42508894|42509169 hsa-miR-499-3p 0 0 1
chr19:42508894|42509169 hsa-miR-940 1 0 0
chr19:42508894|42509169 hsa-miR-3125 1 0 0
chr19:42508894|42509169 hsa-miR-3196 1 0 0
chr19:42508894|42509169 hsa-miR-3916 1 0 0
chr19:42508894|42509169 hsa-miR-4427 0 1 0
chr19:42508894|42509169 hsa-miR-4436a 0 1 0
chr19:42508894|42509169 hsa-miR-4476 1 1 0
chr19:42508894|42509169 hsa-miR-4514 0 1 0
chr19:42508894|42509169 hsa-miR-4533 1 0 0
chr19:42508894|42509169 hsa-miR-4688 1 1 0
chr19:42508894|42509169 hsa-miR-4692 0 1 0
chr19:42508894|42509169 hsa-miR-4739 1 1 0
chr19:42508894|42509169 hsa-miR-4779 1 1 0
chr19:42508894|42509169 hsa-miR-5190 0 1 0
chr19:42508894|42509169 hsa-miR-6077 1 0 0
chr19:42508894|42509169 hsa-miR-6081 1 0 0
chr19:42508894|42509169 hsa-miR-6133 1 0 0
chr19:42508894|42509169 hsa-miR-17-3p 0 1 0
chr19:42508894|42509169 hsa-miR-7106-5p 1 0 0
chr19:42508894|42509169 hsa-miR-4687-3p 1 1 0
chr19:42508894|42509169 hsa-miR-6804-5p 1 0 0
chr19:42508894|42509169 hsa-miR-7114-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6757-5p 0 1 0
chr19:42508894|42509169 hsa-miR-4474-3p 1 1 0
chr19:42508894|42509169 hsa-miR-197-5p 1 0 0
chr19:42508894|42509169 hsa-miR-7108-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6760-5p 1 0 0
chr19:42508894|42509169 hsa-miR-1226-5p 1 0 0
chr19:42508894|42509169 hsa-miR-1229-5p 1 0 0
chr19:42508894|42509169 hsa-miR-30c-2-3p 0 1 0
chr19:42508894|42509169 hsa-miR-3202 1 0 0
chr19:42508894|42509169 hsa-miR-3162-5p 1 1 0
chr19:42508894|42509169 hsa-miR-6828-5p 1 0 0
chr19:42508894|42509169 hsa-miR-1911-3p 0 1 0
chr19:42508894|42509169 hsa-miR-383-3p 0 1 0
chr19:42508894|42509169 hsa-miR-6761-5p 0 1 0
chr19:42508894|42509169 hsa-miR-6802-3p 0 1 0
chr19:42508894|42509169 hsa-miR-5195-5p 0 1 0
chr19:42508894|42509169 hsa-miR-6748-3p 0 1 0
chr19:42508894|42509169 hsa-miR-3162-3p 0 1 0
chr19:42508894|42509169 hsa-miR-6839-3p 0 1 0
chr19:42508894|42509169 hsa-miR-4524b-3p 1 0 0
chr19:42508894|42509169 hsa-miR-1207-5p 1 0 0
chr19:42508894|42509169 hsa-miR-4763-3p 1 0 0
chr19:42508894|42509169 hsa-miR-6812-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6816-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6743-5p 1 1 0
chr19:42508894|42509169 hsa-miR-6752-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6754-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6756-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6803-5p 1 1 0
chr19:42508894|42509169 hsa-miR-7107-5p 1 0 0
chr19:42508894|42509169 hsa-miR-7110-5p 1 0 0
chr19:42508894|42509169 hsa-miR-1249-5p 1 1 0
chr19:42508894|42509169 hsa-miR-6751-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6788-5p 0 1 0
chr19:42508894|42509169 hsa-miR-6797-5p 1 1 0
chr19:42508894|42509169 hsa-miR-4728-5p 0 1 0
chr19:42508894|42509169 hsa-miR-5196-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6780b-5p 1 0 0
chr19:42508894|42509169 hsa-miR-4745-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6858-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6831-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6885-5p 0 1 0
chr19:42508894|42509169 hsa-miR-1238-5p 1 0 0
chr19:42508894|42509169 hsa-miR-4758-5p 1 0 0
chr19:42508894|42509169 hsa-miR-30c-1-3p 1 1 0
chr19:42508894|42509169 hsa-miR-6758-5p 0 1 0
chr19:42508894|42509169 hsa-miR-6856-5p 0 1 0
chr19:42508894|42509169 hsa-miR-6736-5p 1 0 0
chr19:42508894|42509169 hsa-miR-3116 0 1 0
chr19:42508894|42509169 hsa-miR-4646-5p 1 0 0
chr19:42508894|42509169 hsa-miR-4747-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6876-5p 0 1 0
chr19:42508894|42509169 hsa-miR-6891-5p 1 0 0
chr19:42508894|42509169 hsa-miR-4716-3p 0 1 0
chr19:42508894|42509169 hsa-miR-3184-5p 0 1 0
chr19:42508894|42509169 hsa-miR-769-3p 1 0 0
chr19:42508894|42509169 hsa-miR-4756-5p 1 0 0
chr19:42508894|42509169 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:42508894|42509169
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MKPVLLTAVLMYFKSLTLITRRFLSPVGVEGWGQKQLSPTLPS
Nucleotide Sequence ATGAAACCTGTCCTGCTCACTGCAGTGCTGATGTATTTCAAGTCTCTCACCCTCATCACTAGGAGATTCCTTTCCCCTGTAGGGGTAGAGGGGTGGGGACAGAAACAACTTTCTCCTACTCTTCCTTCCTAA

CircID chr19:42508894|42509169
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MFLSPPLYPYRGKESPSDEGERLEIHQHCSEQDRFHYCFFTSE
Nucleotide Sequence TTGTTTCTGTCCCCACCCCTCTACCCCTACAGGGGAAAGGAATCTCCTAGTGATGAGGGTGAGAGACTTGAAATACATCAGCACTGCAGTGAGCAGGACAGGTTTCATTACTGCTTTTTTACTTCTGAATAA

CircID chr19:42508894|42509169
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence LGFLQTPNVLSSIDTERGAVTRQPGDAY
Nucleotide Sequence TTGGGTTTCCTACAGACTCCCAATGTACTTTCATCTATTGACACTGAGAGAGGGGCAGTGACCAGGCAGCCTGGAGATGCCTATTAG

CircID chr19:42508894|42509169
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MRVRDLKYISTAVSRTGFITAFLLLNKLFLWLLGMGRL
Nucleotide Sequence ATGAGGGTGAGAGACTTGAAATACATCAGCACTGCAGTGAGCAGGACAGGTTTCATTACTGCTTTTTTACTTCTGAATAAATTATTTCTGTGGCTGTTAGGGATGGGGAGGCTG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites