CircRNA Information

General Information
circRNA Basic Information
CircID chr19:42510174|42510330
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCACAGCTGGCTAATTTTTTTGTATTTTTAGTAGAGCTGGGGTTTCACCATGTTAGCCAGAATGGTCTCGATCTCCTGACCTTGTGTTTCAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:42510174|42510330 hsa-miR-149-5p 0 0 1
chr19:42510174|42510330 hsa-miR-149-3p 0 0 1
chr19:42510174|42510330 hsa-miR-494-5p 0 0 1
chr19:42510174|42510330 hsa-miR-494-3p 0 0 1
chr19:42510174|42510330 hsa-miR-575 0 0 1
chr19:42510174|42510330 hsa-miR-624-5p 0 0 1
chr19:42510174|42510330 hsa-miR-624-3p 0 0 1
chr19:42510174|42510330 hsa-miR-890 0 0 1
chr19:42510174|42510330 hsa-miR-665 0 0 1
chr19:42510174|42510330 hsa-miR-940 0 0 1
chr19:42510174|42510330 hsa-miR-1827 0 1 1
chr19:42510174|42510330 hsa-miR-485-5p 0 1 1
chr19:42510174|42510330 hsa-miR-566 0 0 1
chr19:42510174|42510330 hsa-miR-548c-3p 0 0 1
chr19:42510174|42510330 hsa-miR-663 0 0 1
chr19:42510174|42510330 hsa-miR-663a 1 0 0
chr19:42510174|42510330 hsa-miR-1202 1 1 0
chr19:42510174|42510330 hsa-miR-4329 1 0 0
chr19:42510174|42510330 hsa-miR-3929 0 1 0
chr19:42510174|42510330 hsa-miR-4449 1 0 0
chr19:42510174|42510330 hsa-miR-4656 1 1 0
chr19:42510174|42510330 hsa-miR-4688 1 0 0
chr19:42510174|42510330 hsa-miR-4739 1 0 0
chr19:42510174|42510330 hsa-miR-4767 1 1 0
chr19:42510174|42510330 hsa-miR-4794 0 1 0
chr19:42510174|42510330 hsa-miR-5192 1 0 0
chr19:42510174|42510330 hsa-miR-5706 0 1 0
chr19:42510174|42510330 hsa-miR-5787 1 0 0
chr19:42510174|42510330 hsa-miR-6085 1 0 0
chr19:42510174|42510330 hsa-miR-6133 1 0 0
chr19:42510174|42510330 hsa-miR-7706 1 0 0
chr19:42510174|42510330 hsa-miR-9899 0 1 0
chr19:42510174|42510330 hsa-miR-6765-5p 1 1 0
chr19:42510174|42510330 hsa-miR-671-5p 1 0 0
chr19:42510174|42510330 hsa-miR-7106-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6894-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6799-5p 1 0 0
chr19:42510174|42510330 hsa-miR-7851-3p 1 0 0
chr19:42510174|42510330 hsa-miR-4768-3p 0 1 0
chr19:42510174|42510330 hsa-miR-7114-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6089 1 0 0
chr19:42510174|42510330 hsa-miR-3192-5p 1 1 0
chr19:42510174|42510330 hsa-miR-6746-5p 1 0 0
chr19:42510174|42510330 hsa-miR-4722-5p 1 1 0
chr19:42510174|42510330 hsa-miR-3064-5p 0 1 0
chr19:42510174|42510330 hsa-miR-7160-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6721-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6760-5p 1 0 0
chr19:42510174|42510330 hsa-miR-2467-3p 1 0 0
chr19:42510174|42510330 hsa-miR-7855-5p 1 1 0
chr19:42510174|42510330 hsa-miR-885-3p 1 0 0
chr19:42510174|42510330 hsa-miR-6771-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6781-5p 1 0 0
chr19:42510174|42510330 hsa-miR-7112-5p 1 0 0
chr19:42510174|42510330 hsa-miR-4707-5p 1 0 0
chr19:42510174|42510330 hsa-let-7e-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6720-3p 0 1 0
chr19:42510174|42510330 hsa-miR-302c-5p 0 1 0
chr19:42510174|42510330 hsa-miR-20b-3p 0 1 0
chr19:42510174|42510330 hsa-miR-1207-5p 1 0 0
chr19:42510174|42510330 hsa-miR-1233-5p 1 0 0
chr19:42510174|42510330 hsa-miR-1273h-5p 1 1 0
chr19:42510174|42510330 hsa-miR-4763-3p 1 0 0
chr19:42510174|42510330 hsa-miR-6778-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6787-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6893-5p 1 1 0
chr19:42510174|42510330 hsa-miR-5001-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6743-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6756-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6803-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6813-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6722-3p 1 0 0
chr19:42510174|42510330 hsa-miR-6774-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6779-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6780a-5p 1 1 0
chr19:42510174|42510330 hsa-miR-6808-5p 1 1 0
chr19:42510174|42510330 hsa-miR-6879-5p 1 0 0
chr19:42510174|42510330 hsa-miR-4728-5p 1 0 0
chr19:42510174|42510330 hsa-miR-1909-3p 1 0 0
chr19:42510174|42510330 hsa-miR-328-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6846-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6848-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6883-5p 1 0 0
chr19:42510174|42510330 hsa-miR-4436b-3p 1 0 0
chr19:42510174|42510330 hsa-miR-6831-5p 1 0 0
chr19:42510174|42510330 hsa-miR-939-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6511a-5p 1 0 0
chr19:42510174|42510330 hsa-miR-4665-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6785-5p 1 0 0
chr19:42510174|42510330 hsa-miR-6884-5p 1 1 0
chr19:42510174|42510330 hsa-miR-6771-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:42510174|42510330
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MGSRHSPASASQVAGTTGARHHSWLIFLYF
Nucleotide Sequence CTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCACAGCTGGCTAATTTTTTTGTATTTTTAG
CircID chr19:42510174|42510330
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MANFFVFLVELGFHHVSQNGLDLLTLCF
Nucleotide Sequence CTGGCTAATTTTTTTGTATTTTTAGTAGAGCTGGGGTTTCACCATGTTAGCCAGAATGGTCTCGATCTCCTGACCTTGTGTTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab