CircRNA Information

General Information
circRNA Basic Information
CircID chr19:43054546|43054737
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCTCTGAATATGGGTGGCGCTGATGGTTGCACAATGCAAATGTATTTCTCAACTGTGCACTTAAAAATTTTTAAGATGGGGTCAGGTGCAGTGGCTCATACCTGTAGTCCCAGCACTTTGGGGTTAAGGCAGGAGGATTATTTGAGTCCAGGAGTTCGAGACCAGCCTGGGCAACATAGGAAGATCTTGTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:43054546|43054737 hsa-miR-17-5p 0 0 1
chr19:43054546|43054737 hsa-miR-17-3p 0 0 1
chr19:43054546|43054737 hsa-miR-19a-5p 0 0 1
chr19:43054546|43054737 hsa-miR-19a-3p 0 0 1
chr19:43054546|43054737 hsa-miR-20a-5p 0 0 1
chr19:43054546|43054737 hsa-miR-20a-3p 0 0 1
chr19:43054546|43054737 hsa-miR-33a-5p 0 0 1
chr19:43054546|43054737 hsa-miR-33a-3p 0 0 1
chr19:43054546|43054737 hsa-miR-93-5p 0 0 1
chr19:43054546|43054737 hsa-miR-93-3p 0 0 1
chr19:43054546|43054737 hsa-miR-106a-5p 0 0 1
chr19:43054546|43054737 hsa-miR-106a-3p 0 0 1
chr19:43054546|43054737 hsa-miR-106b-5p 0 0 1
chr19:43054546|43054737 hsa-miR-106b-3p 0 0 1
chr19:43054546|43054737 hsa-miR-302a-5p 0 0 1
chr19:43054546|43054737 hsa-miR-302a-3p 0 0 1
chr19:43054546|43054737 hsa-miR-302b-5p 0 0 1
chr19:43054546|43054737 hsa-miR-302b-3p 0 0 1
chr19:43054546|43054737 hsa-miR-302c-5p 0 0 1
chr19:43054546|43054737 hsa-miR-302c-3p 0 0 1
chr19:43054546|43054737 hsa-miR-302d-5p 0 0 1
chr19:43054546|43054737 hsa-miR-302d-3p 0 0 1
chr19:43054546|43054737 hsa-miR-372-5p 0 0 1
chr19:43054546|43054737 hsa-miR-372-3p 0 0 1
chr19:43054546|43054737 hsa-miR-373-5p 0 0 1
chr19:43054546|43054737 hsa-miR-373-3p 0 0 1
chr19:43054546|43054737 hsa-miR-422a 0 0 1
chr19:43054546|43054737 hsa-miR-20b-5p 0 0 1
chr19:43054546|43054737 hsa-miR-20b-3p 0 0 1
chr19:43054546|43054737 hsa-miR-520e-5p 0 0 1
chr19:43054546|43054737 hsa-miR-520e-3p 0 0 1
chr19:43054546|43054737 hsa-miR-520b-5p 0 0 1
chr19:43054546|43054737 hsa-miR-520b-3p 0 0 1
chr19:43054546|43054737 hsa-miR-519d-5p 0 0 1
chr19:43054546|43054737 hsa-miR-519d-3p 0 0 1
chr19:43054546|43054737 hsa-miR-520g-5p 0 0 1
chr19:43054546|43054737 hsa-miR-520g-3p 0 0 1
chr19:43054546|43054737 hsa-miR-520h 0 0 1
chr19:43054546|43054737 hsa-miR-539-5p 0 0 1
chr19:43054546|43054737 hsa-miR-539-3p 0 0 1
chr19:43054546|43054737 hsa-miR-552-5p 0 0 1
chr19:43054546|43054737 hsa-miR-552-3p 0 0 1
chr19:43054546|43054737 hsa-miR-580-5p 0 0 1
chr19:43054546|43054737 hsa-miR-580-3p 0 0 1
chr19:43054546|43054737 hsa-miR-33b-5p 0 0 1
chr19:43054546|43054737 hsa-miR-33b-3p 0 0 1
chr19:43054546|43054737 hsa-miR-888-5p 0 0 1
chr19:43054546|43054737 hsa-miR-888-3p 0 0 1
chr19:43054546|43054737 hsa-miR-302e 0 0 1
chr19:43054546|43054737 hsa-miR-512-3p 0 0 1
chr19:43054546|43054737 hsa-miR-556-5p 0 0 1
chr19:43054546|43054737 hsa-miR-337-3p 0 0 1
chr19:43054546|43054737 hsa-miR-520d-3p 0 0 1
chr19:43054546|43054737 hsa-miR-519b-3p 0 0 1
chr19:43054546|43054737 hsa-miR-519c-3p 0 0 1
chr19:43054546|43054737 hsa-miR-520a-3p 0 0 1
chr19:43054546|43054737 hsa-miR-520c-3p 0 0 1
chr19:43054546|43054737 hsa-miR-548c-3p 0 0 1
chr19:43054546|43054737 hsa-miR-378 0 0 1
chr19:43054546|43054737 hsa-miR-500 0 0 1
chr19:43054546|43054737 hsa-miR-1300 0 0 1
chr19:43054546|43054737 hsa-miR-19b 0 0 1
chr19:43054546|43054737 hsa-miR-519a 0 0 1
chr19:43054546|43054737 hsa-miR-1538 1 0 0
chr19:43054546|43054737 hsa-miR-5708 1 0 0
chr19:43054546|43054737 hsa-miR-1225-3p 1 0 0
chr19:43054546|43054737 hsa-miR-6875-3p 1 0 0
chr19:43054546|43054737 hsa-miR-25-3p 1 0 0
chr19:43054546|43054737 hsa-miR-6877-3p 1 0 0
chr19:43054546|43054737 hsa-miR-619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:43054546|43054737
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence MNMGGADGCTMQMYFSTVHLKIFKMGSGAVAHTCSPSTLGLRQEDYLSPGVRDQPGQHRKILS
Nucleotide Sequence CTGAATATGGGTGGCGCTGATGGTTGCACAATGCAAATGTATTTCTCAACTGTGCACTTAAAAATTTTTAAGATGGGGTCAGGTGCAGTGGCTCATACCTGTAGTCCCAGCACTTTGGGGTTAAGGCAGGAGGATTATTTGAGTCCAGGAGTTCGAGACCAGCCTGGGCAACATAGGAAGATCTTGTCA
CircID chr19:43054546|43054737
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MDSNNPPALTPKCWDYRYEPLHLTPS
Nucleotide Sequence CTGGACTCAAATAATCCTCCTGCCTTAACCCCAAAGTGCTGGGACTACAGGTATGAGCCACTGCACCTGACCCCATCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab