CircRNA Information

General Information
circRNA Basic Information
CircID chr19:43461557|43461719
Strand +
CircType exon
Host Gene ENSG00000124466.8;
Algorism CIRI2;
Sequence CTCCGCAACAAGACCTACTTCTCCCCTCGAATCCCACCCCTTGTCCGGCTGCCCCCTCCAGAGCCCACGACTGTGGCCTCAACCACATCTGTCACCACTTCTACCTCGGCCCCAGTGAGACCCACATCCACCACCAAACCCATGCCAGCGCCAACCAGTCAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:43461557|43461719 hsa-let-7b-5p 0 0 1
chr19:43461557|43461719 hsa-let-7b-3p 0 0 1
chr19:43461557|43461719 hsa-let-7c-5p 0 0 1
chr19:43461557|43461719 hsa-let-7c-3p 0 0 1
chr19:43461557|43461719 hsa-let-7d-5p 0 0 1
chr19:43461557|43461719 hsa-let-7d-3p 0 0 1
chr19:43461557|43461719 hsa-let-7e-5p 0 0 1
chr19:43461557|43461719 hsa-let-7e-3p 0 0 1
chr19:43461557|43461719 hsa-miR-98-5p 0 0 1
chr19:43461557|43461719 hsa-miR-98-3p 0 0 1
chr19:43461557|43461719 hsa-let-7g-5p 0 0 1
chr19:43461557|43461719 hsa-let-7g-3p 0 0 1
chr19:43461557|43461719 hsa-let-7i-5p 0 0 1
chr19:43461557|43461719 hsa-let-7i-3p 0 0 1
chr19:43461557|43461719 hsa-miR-345-5p 0 0 1
chr19:43461557|43461719 hsa-miR-345-3p 0 0 1
chr19:43461557|43461719 hsa-miR-563 0 0 1
chr19:43461557|43461719 hsa-miR-608 1 0 1
chr19:43461557|43461719 hsa-miR-629-5p 0 0 1
chr19:43461557|43461719 hsa-miR-629-3p 0 0 1
chr19:43461557|43461719 hsa-miR-658 0 0 1
chr19:43461557|43461719 hsa-miR-760 1 0 1
chr19:43461557|43461719 hsa-miR-1304-5p 0 0 1
chr19:43461557|43461719 hsa-miR-1304-3p 0 0 1
chr19:43461557|43461719 hsa-miR-486-3p 1 0 1
chr19:43461557|43461719 hsa-miR-299-3p 0 0 1
chr19:43461557|43461719 hsa-miR-193a-5p 1 0 1
chr19:43461557|43461719 hsa-miR-876-3p 0 0 1
chr19:43461557|43461719 hsa-miR-576-3p 0 0 1
chr19:43461557|43461719 hsa-miR-542-3p 0 0 1
chr19:43461557|43461719 hsa-miR-323-5p 0 0 1
chr19:43461557|43461719 hsa-miR-1308 0 0 1
chr19:43461557|43461719 hsa-let-7a 0 0 1
chr19:43461557|43461719 hsa-let-7f 0 0 1
chr19:43461557|43461719 hsa-miR-516b 0 0 1
chr19:43461557|43461719 hsa-miR-663a 1 0 0
chr19:43461557|43461719 hsa-miR-762 1 0 0
chr19:43461557|43461719 hsa-miR-1293 1 0 0
chr19:43461557|43461719 hsa-miR-1268a 1 0 0
chr19:43461557|43461719 hsa-miR-1275 1 0 0
chr19:43461557|43461719 hsa-miR-2861 1 0 0
chr19:43461557|43461719 hsa-miR-3132 1 0 0
chr19:43461557|43461719 hsa-miR-3154 1 0 0
chr19:43461557|43461719 hsa-miR-3170 1 0 0
chr19:43461557|43461719 hsa-miR-3178 1 0 0
chr19:43461557|43461719 hsa-miR-3196 1 0 0
chr19:43461557|43461719 hsa-miR-4322 1 0 0
chr19:43461557|43461719 hsa-miR-4257 1 0 0
chr19:43461557|43461719 hsa-miR-4327 1 0 0
chr19:43461557|43461719 hsa-miR-4265 1 0 0
chr19:43461557|43461719 hsa-miR-4270 1 0 0
chr19:43461557|43461719 hsa-miR-4271 1 0 0
chr19:43461557|43461719 hsa-miR-1268b 1 0 0
chr19:43461557|43461719 hsa-miR-4440 1 0 0
chr19:43461557|43461719 hsa-miR-4442 1 0 0
chr19:43461557|43461719 hsa-miR-4451 1 0 0
chr19:43461557|43461719 hsa-miR-4458 1 0 0
chr19:43461557|43461719 hsa-miR-3135b 1 0 0
chr19:43461557|43461719 hsa-miR-4466 1 0 0
chr19:43461557|43461719 hsa-miR-4488 1 0 0
chr19:43461557|43461719 hsa-miR-4498 1 0 0
chr19:43461557|43461719 hsa-miR-4507 1 0 0
chr19:43461557|43461719 hsa-miR-4516 1 0 0
chr19:43461557|43461719 hsa-miR-1587 1 0 0
chr19:43461557|43461719 hsa-miR-3960 1 0 0
chr19:43461557|43461719 hsa-miR-4642 1 0 0
chr19:43461557|43461719 hsa-miR-4648 1 0 0
chr19:43461557|43461719 hsa-miR-4651 1 0 0
chr19:43461557|43461719 hsa-miR-4654 1 0 0
chr19:43461557|43461719 hsa-miR-4656 1 0 0
chr19:43461557|43461719 hsa-miR-4657 1 0 0
chr19:43461557|43461719 hsa-miR-4674 1 0 0
chr19:43461557|43461719 hsa-miR-4688 1 0 0
chr19:43461557|43461719 hsa-miR-4706 1 0 0
chr19:43461557|43461719 hsa-miR-4721 1 0 0
chr19:43461557|43461719 hsa-miR-4739 1 0 0
chr19:43461557|43461719 hsa-miR-4741 1 0 0
chr19:43461557|43461719 hsa-miR-4748 1 0 0
chr19:43461557|43461719 hsa-miR-5090 1 0 0
chr19:43461557|43461719 hsa-miR-5194 1 0 0
chr19:43461557|43461719 hsa-miR-5698 1 0 0
chr19:43461557|43461719 hsa-miR-5787 1 0 0
chr19:43461557|43461719 hsa-miR-6085 1 0 0
chr19:43461557|43461719 hsa-miR-6124 1 0 0
chr19:43461557|43461719 hsa-miR-6133 1 0 0
chr19:43461557|43461719 hsa-miR-6134 1 0 0
chr19:43461557|43461719 hsa-miR-6745 1 0 0
chr19:43461557|43461719 hsa-miR-6863 1 0 0
chr19:43461557|43461719 hsa-miR-7704 1 0 0
chr19:43461557|43461719 hsa-miR-8085 1 0 0
chr19:43461557|43461719 hsa-miR-8089 1 0 0
chr19:43461557|43461719 hsa-miR-12114 1 0 0
chr19:43461557|43461719 hsa-miR-12119 1 0 0
chr19:43461557|43461719 hsa-miR-4433b-3p 1 0 0
chr19:43461557|43461719 hsa-miR-92a-1-5p 1 0 0
chr19:43461557|43461719 hsa-miR-92a-2-5p 1 0 0
chr19:43461557|43461719 hsa-miR-128-1-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6734-5p 1 0 0
chr19:43461557|43461719 hsa-miR-7155-5p 1 0 0
chr19:43461557|43461719 hsa-miR-323a-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6747-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4433a-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6765-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3150a-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6861-5p 1 0 0
chr19:43461557|43461719 hsa-miR-7106-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6825-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6894-5p 1 0 0
chr19:43461557|43461719 hsa-miR-29b-2-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6728-5p 1 0 0
chr19:43461557|43461719 hsa-miR-8071 1 0 0
chr19:43461557|43461719 hsa-miR-6833-5p 1 0 0
chr19:43461557|43461719 hsa-miR-5187-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1227-5p 1 0 0
chr19:43461557|43461719 hsa-miR-7114-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6515-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6089 1 0 0
chr19:43461557|43461719 hsa-miR-6757-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6880-5p 1 0 0
chr19:43461557|43461719 hsa-miR-7847-3p 1 0 0
chr19:43461557|43461719 hsa-miR-4695-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6746-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3064-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6890-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6741-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3622b-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6806-5p 1 0 0
chr19:43461557|43461719 hsa-miR-197-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6742-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3151-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3180-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6748-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6772-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6793-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6796-5p 1 0 0
chr19:43461557|43461719 hsa-miR-185-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6732-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3190-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6805-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6798-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6760-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6782-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6786-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6835-5p 1 0 0
chr19:43461557|43461719 hsa-miR-7109-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1226-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4640-5p 1 0 0
chr19:43461557|43461719 hsa-miR-885-3p 1 0 0
chr19:43461557|43461719 hsa-miR-296-3p 1 0 0
chr19:43461557|43461719 hsa-miR-4650-3p 1 0 0
chr19:43461557|43461719 hsa-miR-3677-3p 1 0 0
chr19:43461557|43461719 hsa-miR-4743-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4787-5p 1 0 0
chr19:43461557|43461719 hsa-miR-149-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6824-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6781-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6877-5p 1 0 0
chr19:43461557|43461719 hsa-miR-664b-5p 1 0 0
chr19:43461557|43461719 hsa-miR-423-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1250-5p 1 0 0
chr19:43461557|43461719 hsa-let-7a-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4750-5p 1 0 0
chr19:43461557|43461719 hsa-miR-2277-5p 1 0 0
chr19:43461557|43461719 hsa-miR-518c-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1306-3p 1 0 0
chr19:43461557|43461719 hsa-miR-10400-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1233-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4763-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6769b-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6778-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6787-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6816-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6865-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6870-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1343-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3180 1 0 0
chr19:43461557|43461719 hsa-miR-6737-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6743-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6752-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6756-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6769a-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6803-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6813-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6819-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6842-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6851-5p 1 0 0
chr19:43461557|43461719 hsa-miR-7110-5p 1 0 0
chr19:43461557|43461719 hsa-miR-10401-5p 1 0 0
chr19:43461557|43461719 hsa-miR-11181-3p 1 0 0
chr19:43461557|43461719 hsa-miR-1249-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6722-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6751-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6779-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6780a-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6788-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6797-5p 1 0 0
chr19:43461557|43461719 hsa-miR-7111-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3620-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4728-5p 1 0 0
chr19:43461557|43461719 hsa-miR-5196-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6780b-5p 1 0 0
chr19:43461557|43461719 hsa-miR-10396b-5p 1 0 0
chr19:43461557|43461719 hsa-miR-10526-3p 1 0 0
chr19:43461557|43461719 hsa-miR-1237-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1909-3p 1 0 0
chr19:43461557|43461719 hsa-miR-328-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4632-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4649-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4725-3p 1 0 0
chr19:43461557|43461719 hsa-miR-4726-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6729-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6738-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6794-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6795-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6846-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6848-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6887-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4697-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4723-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6831-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6845-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6885-5p 1 0 0
chr19:43461557|43461719 hsa-miR-939-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4769-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6511a-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6511b-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3940-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6731-5p 1 0 0
chr19:43461557|43461719 hsa-miR-1914-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6855-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4700-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4747-5p 1 0 0
chr19:43461557|43461719 hsa-miR-4716-3p 1 0 0
chr19:43461557|43461719 hsa-miR-6766-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6785-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6790-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6724-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6791-5p 1 0 0
chr19:43461557|43461719 hsa-miR-6762-5p 1 0 0
chr19:43461557|43461719 hsa-miR-769-3p 1 0 0
chr19:43461557|43461719 hsa-miR-3529-5p 1 0 0
chr19:43461557|43461719 hsa-miR-9851-5p 1 0 0
chr19:43461557|43461719 hsa-miR-10400-3p 1 0 0
chr19:43461557|43461719 hsa-miR-128-2-5p 1 0 0
chr19:43461557|43461719 hsa-miR-3927-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:43461557|43461719
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MPPPEPTTVASTTSVTTSTSAPVRPTSTTKPMPAPTSQ
Nucleotide Sequence CTGCCCCCTCCAGAGCCCACGACTGTGGCCTCAACCACATCTGTCACCACTTCTACCTCGGCCCCAGTGAGACCCACATCCACCACCAAACCCATGCCAGCGCCAACCAGTCAG
CircID chr19:43461557|43461719
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MSGCPLQSPRLWPQPHLSPLLPRPQ
Nucleotide Sequence TTGTCCGGCTGCCCCCTCCAGAGCCCACGACTGTGGCCTCAACCACATCTGTCACCACTTCTACCTCGGCCCCAGTGA
CircID chr19:43461557|43461719
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MWLRPQSWALEGAAGQGVGFEGRSRSCCG
Nucleotide Sequence ATGTGGTTGAGGCCACAGTCGTGGGCTCTGGAGGGGGCAGCCGGACAAGGGGTGGGATTCGAGGGGAGAAGTAGGTCTTGTTGCGGA
CircID chr19:43461557|43461719
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence LTGWRWHGFGGGCGSHWGRGRSGDRCG
Nucleotide Sequence CTGACTGGTTGGCGCTGGCATGGGTTTGGTGGTGGATGTGGGTCTCACTGGGGCCGAGGTAGAAGTGGTGACAGATGTGGTTGA
CircID chr19:43461557|43461719
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MVGAGMGLVVDVGLTGAEVEVVTDVVEATVVGSGGGSRTRGGIRGEK
Nucleotide Sequence CTGGTTGGCGCTGGCATGGGTTTGGTGGTGGATGTGGGTCTCACTGGGGCCGAGGTAGAAGTGGTGACAGATGTGGTTGAGGCCACAGTCGTGGGCTCTGGAGGGGGCAGCCGGACAAGGGGTGGGATTCGAGGGGAGAAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab