CircRNA Information

General Information
circRNA Basic Information
CircID chr19:4354971|4355156
Strand -
CircType exon
Host Gene ENSG00000008382.14;
Algorism CIRI2;
Sequence GGAGTGAGGTCGTGGGTTACCTGGGGGGCCGCTGGGACGTCAACAGCCAGAGTGGGTATCCAGGGCCAGGTGGGCGGGGGCGTTGGAGGACCGGGGTCACGGGGTCACAGCTGCCCCTCCCCACAGTGCTGACGGTGCTCAGAGCCTTCCCTTGTCGGAGCCGGCTCGGGGACGCAGAGACTGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:4354971|4355156 hsa-miR-149-5p 0 0 1
chr19:4354971|4355156 hsa-miR-149-3p 0 0 1
chr19:4354971|4355156 hsa-miR-328-5p 0 0 1
chr19:4354971|4355156 hsa-miR-328-3p 0 0 1
chr19:4354971|4355156 hsa-miR-593-5p 0 0 1
chr19:4354971|4355156 hsa-miR-593-3p 0 0 1
chr19:4354971|4355156 hsa-miR-760 1 1 1
chr19:4354971|4355156 hsa-miR-939-5p 0 0 1
chr19:4354971|4355156 hsa-miR-939-3p 0 0 1
chr19:4354971|4355156 hsa-miR-1291 0 0 1
chr19:4354971|4355156 hsa-miR-1267 0 0 1
chr19:4354971|4355156 hsa-miR-491-5p 0 0 1
chr19:4354971|4355156 hsa-miR-486-3p 0 1 1
chr19:4354971|4355156 hsa-miR-615-3p 0 0 1
chr19:4354971|4355156 hsa-miR-423-5p 0 1 1
chr19:4354971|4355156 hsa-miR-361-3p 1 1 1
chr19:4354971|4355156 hsa-miR-1224-3p 0 0 1
chr19:4354971|4355156 hsa-miR-483-3p 0 0 1
chr19:4354971|4355156 hsa-miR-4313 1 0 0
chr19:4354971|4355156 hsa-miR-3921 0 1 0
chr19:4354971|4355156 hsa-miR-4688 0 1 0
chr19:4354971|4355156 hsa-miR-4739 1 0 0
chr19:4354971|4355156 hsa-miR-7703 1 0 0
chr19:4354971|4355156 hsa-miR-7974 1 0 0
chr19:4354971|4355156 hsa-miR-8089 1 0 0
chr19:4354971|4355156 hsa-miR-6749-3p 1 0 0
chr19:4354971|4355156 hsa-miR-4726-3p 1 1 0
chr19:4354971|4355156 hsa-miR-6825-5p 1 1 0
chr19:4354971|4355156 hsa-miR-210-5p 1 1 0
chr19:4354971|4355156 hsa-miR-3064-5p 0 1 0
chr19:4354971|4355156 hsa-miR-296-5p 1 0 0
chr19:4354971|4355156 hsa-miR-6840-5p 1 0 0
chr19:4354971|4355156 hsa-miR-6796-5p 0 1 0
chr19:4354971|4355156 hsa-miR-2467-5p 1 0 0
chr19:4354971|4355156 hsa-miR-6765-3p 0 1 0
chr19:4354971|4355156 hsa-miR-7108-3p 0 1 0
chr19:4354971|4355156 hsa-miR-146b-3p 0 1 0
chr19:4354971|4355156 hsa-miR-4757-3p 0 1 0
chr19:4354971|4355156 hsa-miR-3605-3p 0 1 0
chr19:4354971|4355156 hsa-miR-6777-3p 1 0 0
chr19:4354971|4355156 hsa-miR-6808-3p 0 1 0
chr19:4354971|4355156 hsa-miR-6816-5p 1 0 0
chr19:4354971|4355156 hsa-miR-6763-5p 0 1 0
chr19:4354971|4355156 hsa-miR-1915-3p 1 0 0
chr19:4354971|4355156 hsa-miR-4728-5p 1 0 0
chr19:4354971|4355156 hsa-miR-6780b-5p 1 0 0
chr19:4354971|4355156 hsa-miR-4725-3p 1 0 0
chr19:4354971|4355156 hsa-miR-10396a-3p 1 0 0
chr19:4354971|4355156 hsa-miR-10396b-3p 1 0 0
chr19:4354971|4355156 hsa-miR-6799-3p 1 0 0
chr19:4354971|4355156 hsa-miR-6785-5p 0 1 0
chr19:4354971|4355156 hsa-miR-3184-5p 0 1 0
chr19:4354971|4355156 hsa-miR-6792-3p 1 1 0
chr19:4354971|4355156 hsa-miR-6810-3p 0 1 0
chr19:4354971|4355156 hsa-miR-6775-3p 1 0 0
chr19:4354971|4355156 hsa-miR-10392-3p 1 1 0
chr19:4354971|4355156 hsa-miR-3085-3p 1 1 0
chr19:4354971|4355156 hsa-miR-6824-3p 1 0 0
chr19:4354971|4355156 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:4354971|4355156
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MGRQQPEWVSRARWAGALEDRGHGVTAAPPHSADGAQSLPLSEPARGRRDC
Nucleotide Sequence CTGGGACGTCAACAGCCAGAGTGGGTATCCAGGGCCAGGTGGGCGGGGGCGTTGGAGGACCGGGGTCACGGGGTCACAGCTGCCCCTCCCCACAGTGCTGACGGTGCTCAGAGCCTTCCCTTGTCGGAGCCGGCTCGGGGACGCAGAGACTGC
CircID chr19:4354971|4355156
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MGGRWDVNSQSGYPGPGGRGRWRTGVTGSQLPLPTVLTVLRAFPCRSRLGDAETA
Nucleotide Sequence CTGGGGGGCCGCTGGGACGTCAACAGCCAGAGTGGGTATCCAGGGCCAGGTGGGCGGGGGCGTTGGAGGACCGGGGTCACGGGGTCACAGCTGCCCCTCCCCACAGTGCTGACGGTGCTCAGAGCCTTCCCTTGTCGGAGCCGGCTCGGGGACGCAGAGACTGCA
CircID chr19:4354971|4355156
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MSTVSTVGRGSCDPVTPVLQRPRPPGPGYPLWLLTSQRPPR
Nucleotide Sequence CTGAGCACCGTCAGCACTGTGGGGAGGGGCAGCTGTGACCCCGTGACCCCGGTCCTCCAACGCCCCCGCCCACCTGGCCCTGGATACCCACTCTGGCTGTTGACGTCCCAGCGGCCCCCCAGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab