CircRNA Information

General Information
circRNA Basic Information
CircID chr19:43553401|43553631
Strand -
CircType exon
Host Gene ENSG00000073050.10;
Algorism CIRI2;
Sequence CTGGGGATGTCTTGTTGATCCGGCTGAAGAAGAGAGCCCCCGGCCTCAGAGAGTTGGCGCTCTCATCCTCCTCCTTCACACGGAACTGGCCAAGCTTGGTCACTGTCACCTTCTAAGGTCCCGCAAGGTCAGTATTATAGGTGGGCTGCTGGCAGGTGGGGGTGGAGAGGCAGGGAGAAGGCCATGGGGAGTGACAGGTACAGCTTACCTGGGACGGGGCCTCTGCCTCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:43553401|43553631 hsa-miR-200b-5p 0 0 1
chr19:43553401|43553631 hsa-miR-200b-3p 0 0 1
chr19:43553401|43553631 hsa-miR-200c-5p 0 0 1
chr19:43553401|43553631 hsa-miR-200c-3p 0 0 1
chr19:43553401|43553631 hsa-miR-374a-5p 0 0 1
chr19:43553401|43553631 hsa-miR-374a-3p 0 0 1
chr19:43553401|43553631 hsa-miR-429 0 0 1
chr19:43553401|43553631 hsa-miR-588 0 0 1
chr19:43553401|43553631 hsa-miR-641 0 0 1
chr19:43553401|43553631 hsa-miR-668-5p 0 0 1
chr19:43553401|43553631 hsa-miR-668-3p 0 0 1
chr19:43553401|43553631 hsa-miR-765 0 0 1
chr19:43553401|43553631 hsa-miR-374b-5p 0 0 1
chr19:43553401|43553631 hsa-miR-374b-3p 0 0 1
chr19:43553401|43553631 hsa-miR-1236-5p 0 0 1
chr19:43553401|43553631 hsa-miR-1236-3p 0 0 1
chr19:43553401|43553631 hsa-miR-1202 0 0 1
chr19:43553401|43553631 hsa-miR-1247-5p 0 0 1
chr19:43553401|43553631 hsa-miR-1247-3p 0 0 1
chr19:43553401|43553631 hsa-miR-1255a 0 0 1
chr19:43553401|43553631 hsa-miR-1252-5p 0 0 1
chr19:43553401|43553631 hsa-miR-1252-3p 0 0 1
chr19:43553401|43553631 hsa-miR-1827 0 0 1
chr19:43553401|43553631 hsa-miR-339-3p 0 0 1
chr19:43553401|43553631 hsa-miR-1224-3p 0 0 1
chr19:43553401|43553631 hsa-miR-483-3p 0 0 1
chr19:43553401|43553631 hsa-miR-542-3p 0 0 1
chr19:43553401|43553631 hsa-miR-369-3p 0 0 1
chr19:43553401|43553631 hsa-miR-1255b 0 0 1
chr19:43553401|43553631 hsa-miR-4739 1 0 0
chr19:43553401|43553631 hsa-miR-5190 1 0 0
chr19:43553401|43553631 hsa-miR-6127 1 0 0
chr19:43553401|43553631 hsa-miR-6133 1 0 0
chr19:43553401|43553631 hsa-miR-4726-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6894-5p 1 0 0
chr19:43553401|43553631 hsa-miR-766-3p 1 0 0
chr19:43553401|43553631 hsa-miR-3663-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6089 1 0 0
chr19:43553401|43553631 hsa-miR-6880-5p 1 0 0
chr19:43553401|43553631 hsa-miR-7847-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6873-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6841-3p 1 0 0
chr19:43553401|43553631 hsa-miR-1915-5p 1 0 0
chr19:43553401|43553631 hsa-miR-6882-3p 1 0 0
chr19:43553401|43553631 hsa-miR-4763-5p 1 0 0
chr19:43553401|43553631 hsa-miR-6894-3p 1 0 0
chr19:43553401|43553631 hsa-miR-7113-3p 1 0 0
chr19:43553401|43553631 hsa-miR-339-5p 1 0 0
chr19:43553401|43553631 hsa-miR-7106-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6752-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6738-3p 1 0 0
chr19:43553401|43553631 hsa-miR-3620-3p 1 0 0
chr19:43553401|43553631 hsa-miR-1249-5p 1 0 0
chr19:43553401|43553631 hsa-miR-6891-5p 1 0 0
chr19:43553401|43553631 hsa-miR-4722-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6893-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6775-3p 1 0 0
chr19:43553401|43553631 hsa-miR-4723-3p 1 0 0
chr19:43553401|43553631 hsa-miR-6511b-3p 1 0 0
chr19:43553401|43553631 hsa-miR-4756-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:43553401|43553631
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MSPSKVPQGQYYRWAAGRWGWRGREKAMGSDRYSLPGTGPLPH
Nucleotide Sequence CTGTCACCTTCTAAGGTCCCGCAAGGTCAGTATTATAGGTGGGCTGCTGGCAGGTGGGGGTGGAGAGGCAGGGAGAAGGCCATGGGGAGTGACAGGTACAGCTTACCTGGGACGGGGCCTCTGCCTCAT
CircID chr19:43553401|43553631
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MAKLGHCHLLRSRKVSIIGGLLAGGGGEAGRRPWGVTGTAYLGRGLCL
Nucleotide Sequence CTGGCCAAGCTTGGTCACTGTCACCTTCTAAGGTCCCGCAAGGTCAGTATTATAGGTGGGCTGCTGGCAGGTGGGGGTGGAGAGGCAGGGAGAAGGCCATGGGGAGTGACAGGTACAGCTTACCTGGGACGGGGCCTCTGCCTC
CircID chr19:43553401|43553631
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MLIRLKKRAPGLRELALSSSSFTRNWPSLVTVTF
Nucleotide Sequence TTGTTGATCCGGCTGAAGAAGAGAGCCCCCGGCCTCAGAGAGTTGGCGCTCTCATCCTCCTCCTTCACACGGAACTGGCCAAGCTTGGTCACTGTCACCTTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab