CircRNA Information

General Information
circRNA Basic Information
CircID chr19:43747780|43748016
Strand -
CircType exon
Host Gene ENSG00000105771.12;
Algorism CIRI2;
Sequence CTGTCACGGCCACAGGCCCCTTCCCCTCCTCCCGTGGCTTCATGAGAACGATGGGCTTCTCCAGAGGGGCTGGAGCAGGCGGGGCAGCAGGGGCTGTTGGAGGTGGTGGCTGTTTTGACTACGGAGGTAAAAAAAATCCCATCAATGGGGGCAATCCCTTCCCTAACGGCTCCCCCTCCTCCCTCCTTCTCTGCTCACCCGCTCTGCTGGAGGTTTTGAGAGGATGATGGGGGTTTT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:43747780|43748016 hsa-miR-370-5p 0 0 1
chr19:43747780|43748016 hsa-miR-370-3p 0 0 1
chr19:43747780|43748016 hsa-miR-1323 0 0 1
chr19:43747780|43748016 hsa-miR-766-5p 0 0 1
chr19:43747780|43748016 hsa-miR-766-3p 0 0 1
chr19:43747780|43748016 hsa-miR-765 0 1 1
chr19:43747780|43748016 hsa-miR-922 0 0 1
chr19:43747780|43748016 hsa-miR-939-5p 0 0 1
chr19:43747780|43748016 hsa-miR-939-3p 0 0 1
chr19:43747780|43748016 hsa-miR-663b 0 0 1
chr19:43747780|43748016 hsa-miR-1290 0 0 1
chr19:43747780|43748016 hsa-miR-548o-3p 0 0 1
chr19:43747780|43748016 hsa-miR-1321 0 0 1
chr19:43747780|43748016 hsa-miR-548o 0 0 1
chr19:43747780|43748016 hsa-miR-338-3p 0 0 1
chr19:43747780|43748016 hsa-miR-324-3p 0 0 1
chr19:43747780|43748016 hsa-miR-542-3p 0 0 1
chr19:43747780|43748016 hsa-miR-220b 0 0 1
chr19:43747780|43748016 hsa-miR-371-5p 0 0 1
chr19:43747780|43748016 hsa-miR-516b 0 0 1
chr19:43747780|43748016 hsa-miR-886-3p 0 0 1
chr19:43747780|43748016 hsa-miR-596 0 1 0
chr19:43747780|43748016 hsa-miR-1913 0 1 0
chr19:43747780|43748016 hsa-miR-2861 0 1 0
chr19:43747780|43748016 hsa-miR-3141 1 0 0
chr19:43747780|43748016 hsa-miR-3909 0 1 0
chr19:43747780|43748016 hsa-miR-4510 0 1 0
chr19:43747780|43748016 hsa-miR-4530 1 1 0
chr19:43747780|43748016 hsa-miR-4739 1 1 0
chr19:43747780|43748016 hsa-miR-4779 0 1 0
chr19:43747780|43748016 hsa-miR-5690 0 1 0
chr19:43747780|43748016 hsa-miR-6127 0 1 0
chr19:43747780|43748016 hsa-miR-6129 0 1 0
chr19:43747780|43748016 hsa-miR-6133 0 1 0
chr19:43747780|43748016 hsa-miR-8060 1 1 0
chr19:43747780|43748016 hsa-miR-8089 1 0 0
chr19:43747780|43748016 hsa-miR-12118 0 1 0
chr19:43747780|43748016 hsa-miR-197-3p 0 1 0
chr19:43747780|43748016 hsa-miR-6836-3p 1 0 0
chr19:43747780|43748016 hsa-miR-671-5p 1 0 0
chr19:43747780|43748016 hsa-miR-7106-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6720-5p 0 1 0
chr19:43747780|43748016 hsa-miR-210-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6510-5p 0 1 0
chr19:43747780|43748016 hsa-miR-1225-3p 0 1 0
chr19:43747780|43748016 hsa-miR-6759-5p 1 0 0
chr19:43747780|43748016 hsa-miR-6783-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6827-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6735-3p 0 1 0
chr19:43747780|43748016 hsa-miR-6882-3p 0 1 0
chr19:43747780|43748016 hsa-miR-4732-5p 1 1 0
chr19:43747780|43748016 hsa-miR-149-3p 1 1 0
chr19:43747780|43748016 hsa-miR-6824-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6769a-3p 0 1 0
chr19:43747780|43748016 hsa-miR-7846-3p 1 0 0
chr19:43747780|43748016 hsa-miR-6811-3p 0 1 0
chr19:43747780|43748016 hsa-miR-6856-3p 0 1 0
chr19:43747780|43748016 hsa-miR-4749-3p 0 1 0
chr19:43747780|43748016 hsa-miR-518c-5p 0 1 0
chr19:43747780|43748016 hsa-miR-3173-5p 0 1 0
chr19:43747780|43748016 hsa-miR-570-3p 0 1 0
chr19:43747780|43748016 hsa-miR-4485-5p 0 1 0
chr19:43747780|43748016 hsa-miR-4763-3p 1 0 0
chr19:43747780|43748016 hsa-miR-6870-5p 0 1 0
chr19:43747780|43748016 hsa-miR-1343-5p 1 0 0
chr19:43747780|43748016 hsa-miR-6743-5p 1 0 0
chr19:43747780|43748016 hsa-miR-6756-5p 1 0 0
chr19:43747780|43748016 hsa-miR-11181-3p 0 1 0
chr19:43747780|43748016 hsa-miR-1249-5p 1 1 0
chr19:43747780|43748016 hsa-miR-6797-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6879-5p 1 1 0
chr19:43747780|43748016 hsa-miR-7111-5p 0 1 0
chr19:43747780|43748016 hsa-miR-4728-5p 0 1 0
chr19:43747780|43748016 hsa-miR-5196-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6780b-5p 0 1 0
chr19:43747780|43748016 hsa-miR-4725-3p 0 1 0
chr19:43747780|43748016 hsa-miR-4723-5p 0 1 0
chr19:43747780|43748016 hsa-miR-4758-5p 1 0 0
chr19:43747780|43748016 hsa-miR-3173-3p 0 1 0
chr19:43747780|43748016 hsa-miR-4747-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6891-5p 0 1 0
chr19:43747780|43748016 hsa-miR-6893-3p 0 1 0
chr19:43747780|43748016 hsa-miR-6792-3p 0 1 0
chr19:43747780|43748016 hsa-miR-6810-3p 0 1 0
chr19:43747780|43748016 hsa-miR-10392-3p 1 0 0
chr19:43747780|43748016 hsa-miR-6512-3p 0 1 0
chr19:43747780|43748016 hsa-miR-6771-3p 0 1 0
chr19:43747780|43748016 hsa-miR-616-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:43747780|43748016
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MEQAGQQGLLEVVAVLTTEVKKIPSMGAIPSLTAPPPPSFSAHPLCWRF
Nucleotide Sequence CTGGAGCAGGCGGGGCAGCAGGGGCTGTTGGAGGTGGTGGCTGTTTTGACTACGGAGGTAAAAAAAATCCCATCAATGGGGGCAATCCCTTCCCTAACGGCTCCCCCTCCTCCCTCCTTCTCTGCTCACCCGCTCTGCTGGAGGTTTTGA
CircID chr19:43747780|43748016
ORF Type ORF2
Protein Length 61
Nucleotide Length 186
Protein Sequence MRTMGFSRGAGAGGAAGAVGGGGCFDYGGKKNPINGGNPFPNGSPSSLLLCSPALLEVLRG
Nucleotide Sequence ATGAGAACGATGGGCTTCTCCAGAGGGGCTGGAGCAGGCGGGGCAGCAGGGGCTGTTGGAGGTGGTGGCTGTTTTGACTACGGAGGTAAAAAAAATCCCATCAATGGGGGCAATCCCTTCCCTAACGGCTCCCCCTCCTCCCTCCTTCTCTGCTCACCCGCTCTGCTGGAGGTTTTGAGAGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab