CircRNA Information

General Information
circRNA Basic Information
CircID chr19:44662004|44662258
Strand +
CircType exon
Host Gene ENSG00000073008.13;
Algorism CIRI2;
Sequence TCTGGACACAAAGATCTCGAGTGAGCTGCTCTGGTTGGCAGTATTGGCAGTACTTCTTGCATGTTGTCACATGTTGCTGTGAGAATCAGGTGCTGCCTATATGGCTCCACTGGGAGAGGGCAGATGGAAGCCGTCGCCTCATCTGTCGTGGAACGTGTGCTGTGCACCTCCTCCCTTTGCTGATCTTAATCTCTGTCCTTTTACTGTAATAAACTGTAACTGTGAGCCTAACAGCTTTCCTGAGTCTAGTGAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:44662004|44662258 hsa-miR-27a-5p 0 0 1
chr19:44662004|44662258 hsa-miR-27a-3p 0 0 1
chr19:44662004|44662258 hsa-miR-198 0 0 1
chr19:44662004|44662258 hsa-miR-200b-5p 0 0 1
chr19:44662004|44662258 hsa-miR-200b-3p 0 0 1
chr19:44662004|44662258 hsa-miR-27b-5p 0 0 1
chr19:44662004|44662258 hsa-miR-27b-3p 0 0 1
chr19:44662004|44662258 hsa-miR-144-5p 0 0 1
chr19:44662004|44662258 hsa-miR-144-3p 0 0 1
chr19:44662004|44662258 hsa-miR-150-5p 0 0 1
chr19:44662004|44662258 hsa-miR-150-3p 0 0 1
chr19:44662004|44662258 hsa-miR-320a-5p 0 0 1
chr19:44662004|44662258 hsa-miR-320a-3p 0 0 1
chr19:44662004|44662258 hsa-miR-200c-5p 0 0 1
chr19:44662004|44662258 hsa-miR-200c-3p 0 0 1
chr19:44662004|44662258 hsa-miR-429 0 0 1
chr19:44662004|44662258 hsa-miR-510-5p 0 0 1
chr19:44662004|44662258 hsa-miR-510-3p 0 0 1
chr19:44662004|44662258 hsa-miR-545-5p 0 0 1
chr19:44662004|44662258 hsa-miR-545-3p 0 0 1
chr19:44662004|44662258 hsa-miR-592 0 0 1
chr19:44662004|44662258 hsa-miR-599 0 0 1
chr19:44662004|44662258 hsa-miR-646 0 1 1
chr19:44662004|44662258 hsa-miR-765 0 0 1
chr19:44662004|44662258 hsa-miR-873-5p 0 0 1
chr19:44662004|44662258 hsa-miR-873-3p 0 0 1
chr19:44662004|44662258 hsa-miR-935 0 0 1
chr19:44662004|44662258 hsa-miR-940 0 0 1
chr19:44662004|44662258 hsa-miR-1229-5p 0 0 1
chr19:44662004|44662258 hsa-miR-1229-3p 0 0 1
chr19:44662004|44662258 hsa-miR-1258 0 0 1
chr19:44662004|44662258 hsa-miR-1278 0 0 1
chr19:44662004|44662258 hsa-miR-1321 0 0 1
chr19:44662004|44662258 hsa-miR-532-3p 0 0 1
chr19:44662004|44662258 hsa-miR-582-5p 0 0 1
chr19:44662004|44662258 hsa-miR-324-3p 0 0 1
chr19:44662004|44662258 hsa-miR-320b 0 0 1
chr19:44662004|44662258 hsa-miR-320c 0 0 1
chr19:44662004|44662258 hsa-miR-320d 0 0 1
chr19:44662004|44662258 hsa-miR-342-3p 0 0 1
chr19:44662004|44662258 hsa-miR-542-3p 0 0 1
chr19:44662004|44662258 hsa-miR-556-3p 0 0 1
chr19:44662004|44662258 hsa-miR-128 0 0 1
chr19:44662004|44662258 hsa-miR-549 0 0 1
chr19:44662004|44662258 hsa-miR-101 0 0 1
chr19:44662004|44662258 hsa-miR-184 1 0 0
chr19:44662004|44662258 hsa-miR-608 1 0 0
chr19:44662004|44662258 hsa-miR-936 1 1 0
chr19:44662004|44662258 hsa-miR-3138 1 0 0
chr19:44662004|44662258 hsa-miR-4298 1 0 0
chr19:44662004|44662258 hsa-miR-3936 1 0 0
chr19:44662004|44662258 hsa-miR-4429 0 1 0
chr19:44662004|44662258 hsa-miR-4510 1 1 0
chr19:44662004|44662258 hsa-miR-4533 1 0 0
chr19:44662004|44662258 hsa-miR-4739 1 1 0
chr19:44662004|44662258 hsa-miR-6124 1 0 0
chr19:44662004|44662258 hsa-miR-6133 1 0 0
chr19:44662004|44662258 hsa-miR-12115 1 1 0
chr19:44662004|44662258 hsa-miR-12128 1 0 0
chr19:44662004|44662258 hsa-miR-211-3p 1 0 0
chr19:44662004|44662258 hsa-miR-7106-5p 0 1 0
chr19:44662004|44662258 hsa-miR-6825-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6892-3p 0 1 0
chr19:44662004|44662258 hsa-miR-6799-5p 1 0 0
chr19:44662004|44662258 hsa-miR-505-5p 0 1 0
chr19:44662004|44662258 hsa-miR-7845-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6760-5p 1 0 0
chr19:44662004|44662258 hsa-miR-5088-5p 1 0 0
chr19:44662004|44662258 hsa-miR-7161-3p 0 1 0
chr19:44662004|44662258 hsa-miR-6516-5p 0 1 0
chr19:44662004|44662258 hsa-miR-6847-5p 1 0 0
chr19:44662004|44662258 hsa-miR-4787-5p 1 0 0
chr19:44662004|44662258 hsa-miR-3120-3p 0 1 0
chr19:44662004|44662258 hsa-miR-2115-5p 0 1 0
chr19:44662004|44662258 hsa-let-7e-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6804-3p 0 1 0
chr19:44662004|44662258 hsa-miR-5189-3p 0 1 0
chr19:44662004|44662258 hsa-miR-6501-3p 0 1 0
chr19:44662004|44662258 hsa-miR-6847-3p 1 0 0
chr19:44662004|44662258 hsa-miR-506-5p 0 1 0
chr19:44662004|44662258 hsa-miR-3680-5p 0 1 0
chr19:44662004|44662258 hsa-miR-1233-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6778-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6752-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6756-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6803-5p 1 0 0
chr19:44662004|44662258 hsa-miR-11181-3p 0 1 0
chr19:44662004|44662258 hsa-miR-1249-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6879-5p 1 0 0
chr19:44662004|44662258 hsa-miR-4728-5p 1 0 0
chr19:44662004|44662258 hsa-miR-4632-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6735-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6795-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6887-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6891-5p 1 0 0
chr19:44662004|44662258 hsa-miR-6785-5p 1 0 0
chr19:44662004|44662258 hsa-miR-3689d 0 1 0
chr19:44662004|44662258 hsa-miR-6762-5p 0 1 0
chr19:44662004|44662258 hsa-miR-323b-3p 0 1 0
chr19:44662004|44662258 hsa-miR-3622a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:44662004|44662258
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MVGSIGSTSCMLSHVAVRIRCCLYGSTGRGQMEAVASSVVERVLCTSSLC
Nucleotide Sequence CTGGTTGGCAGTATTGGCAGTACTTCTTGCATGTTGTCACATGTTGCTGTGAGAATCAGGTGCTGCCTATATGGCTCCACTGGGAGAGGGCAGATGGAAGCCGTCGCCTCATCTGTCGTGGAACGTGTGCTGTGCACCTCCTCCCTTTGCTGA
CircID chr19:44662004|44662258
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence LDTKISSELLWLAVLAVLLACCHMLL
Nucleotide Sequence CTGGACACAAAGATCTCGAGTGAGCTGCTCTGGTTGGCAGTATTGGCAGTACTTCTTGCATGTTGTCACATGTTGCTGTGA
CircID chr19:44662004|44662258
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MAPLGEGRWKPSPHLSWNVCCAPPPFADLNLCPFTVINCNCEPNSFPESSE
Nucleotide Sequence ATGGCTCCACTGGGAGAGGGCAGATGGAAGCCGTCGCCTCATCTGTCGTGGAACGTGTGCTGTGCACCTCCTCCCTTTGCTGATCTTAATCTCTGTCCTTTTACTGTAATAAACTGTAACTGTGAGCCTAACAGCTTTCCTGAGTCTAGTGAG
CircID chr19:44662004|44662258
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MHVVTCCCENQVLPIWLHWERADGSRRLICRGTCAVHLLPLLILISVLLL
Nucleotide Sequence TTGCATGTTGTCACATGTTGCTGTGAGAATCAGGTGCTGCCTATATGGCTCCACTGGGAGAGGGCAGATGGAAGCCGTCGCCTCATCTGTCGTGGAACGTGTGCTGTGCACCTCCTCCCTTTGCTGATCTTAATCTCTGTCCTTTTACTGTAA
CircID chr19:44662004|44662258
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MLGSQLQFITVKGQRLRSAKGGGAQHTFHDR
Nucleotide Sequence CTGTTAGGCTCACAGTTACAGTTTATTACAGTAAAAGGACAGAGATTAAGATCAGCAAAGGGAGGAGGTGCACAGCACACGTTCCACGACAGATGA
CircID chr19:44662004|44662258
ORF Type ORF6
Protein Length 29
Nucleotide Length 87
Protein Sequence MILTATCDNMQEVLPILPTRAAHSRSLCP
Nucleotide Sequence CTGATTCTCACAGCAACATGTGACAACATGCAAGAAGTACTGCCAATACTGCCAACCAGAGCAGCTCACTCGAGATCTTTGTGTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab