CircRNA Information

General Information
circRNA Basic Information
CircID chr19:44813274|44813537
Strand -
CircType exon
Host Gene ENSG00000187244.9;
Algorism CIRI2;
Sequence GGGAACCCGGCCCCCAAGATCACGTGGTATCGCAACGGGCAGCGCCTGGAGGTGCCCGTAGAGATGAACCCAGGTGAGCAGCGCAGGAGCGCGGCGGGACGTGGGCTGGGGTGGGTGGCGGGGCTATGGCCTGGCTGACTGCCACCTCCCCCGATCTCTCCCAGAGGGCTACATGACCAGCCGCACGGTCCGGGAGGCCTCGGGCCTGCTCTCCCTCACCAGCACCCTCTACCTGCGGCTCCGCAAGGATGACCGAGACGCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:44813274|44813537 hsa-miR-34a-5p 0 0 1
chr19:44813274|44813537 hsa-miR-34a-3p 0 0 1
chr19:44813274|44813537 hsa-miR-185-5p 0 0 1
chr19:44813274|44813537 hsa-miR-185-3p 0 0 1
chr19:44813274|44813537 hsa-miR-326 0 0 1
chr19:44813274|44813537 hsa-miR-449a 0 0 1
chr19:44813274|44813537 hsa-miR-635 0 0 1
chr19:44813274|44813537 hsa-miR-662 0 0 1
chr19:44813274|44813537 hsa-miR-449b-5p 0 0 1
chr19:44813274|44813537 hsa-miR-449b-3p 0 0 1
chr19:44813274|44813537 hsa-miR-658 1 0 1
chr19:44813274|44813537 hsa-miR-1178-5p 0 0 1
chr19:44813274|44813537 hsa-miR-1178-3p 0 0 1
chr19:44813274|44813537 hsa-miR-1275 0 0 1
chr19:44813274|44813537 hsa-miR-502-5p 0 0 1
chr19:44813274|44813537 hsa-miR-767-3p 0 0 1
chr19:44813274|44813537 hsa-miR-330-5p 0 0 1
chr19:44813274|44813537 hsa-miR-362-5p 0 1 1
chr19:44813274|44813537 hsa-miR-34c-5p 0 0 1
chr19:44813274|44813537 hsa-miR-138 0 0 1
chr19:44813274|44813537 hsa-miR-129-3p 0 0 1
chr19:44813274|44813537 hsa-miR-608 1 0 0
chr19:44813274|44813537 hsa-miR-638 1 1 0
chr19:44813274|44813537 hsa-miR-661 1 0 0
chr19:44813274|44813537 hsa-miR-921 1 0 0
chr19:44813274|44813537 hsa-miR-1182 1 0 0
chr19:44813274|44813537 hsa-miR-1539 0 1 0
chr19:44813274|44813537 hsa-miR-1976 0 1 0
chr19:44813274|44813537 hsa-miR-2278 0 1 0
chr19:44813274|44813537 hsa-miR-3132 1 0 0
chr19:44813274|44813537 hsa-miR-3137 1 0 0
chr19:44813274|44813537 hsa-miR-3196 1 0 0
chr19:44813274|44813537 hsa-miR-4299 0 1 0
chr19:44813274|44813537 hsa-miR-4258 0 1 0
chr19:44813274|44813537 hsa-miR-3615 0 1 0
chr19:44813274|44813537 hsa-miR-3621 1 0 0
chr19:44813274|44813537 hsa-miR-3651 0 1 0
chr19:44813274|44813537 hsa-miR-3665 1 0 0
chr19:44813274|44813537 hsa-miR-4479 1 0 0
chr19:44813274|44813537 hsa-miR-4510 0 1 0
chr19:44813274|44813537 hsa-miR-4710 0 1 0
chr19:44813274|44813537 hsa-miR-4739 0 1 0
chr19:44813274|44813537 hsa-miR-5090 1 0 0
chr19:44813274|44813537 hsa-miR-5698 0 1 0
chr19:44813274|44813537 hsa-miR-5787 1 0 0
chr19:44813274|44813537 hsa-miR-6131 0 1 0
chr19:44813274|44813537 hsa-miR-6134 0 1 0
chr19:44813274|44813537 hsa-miR-8072 1 0 0
chr19:44813274|44813537 hsa-miR-8085 0 1 0
chr19:44813274|44813537 hsa-miR-12114 1 0 0
chr19:44813274|44813537 hsa-miR-12115 1 0 0
chr19:44813274|44813537 hsa-miR-138-5p 1 1 0
chr19:44813274|44813537 hsa-miR-4747-3p 0 1 0
chr19:44813274|44813537 hsa-miR-128-1-5p 1 0 0
chr19:44813274|44813537 hsa-miR-15a-3p 0 1 0
chr19:44813274|44813537 hsa-miR-3157-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6825-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6894-5p 1 0 0
chr19:44813274|44813537 hsa-miR-1972 0 1 0
chr19:44813274|44813537 hsa-miR-4687-3p 1 0 0
chr19:44813274|44813537 hsa-miR-6799-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6804-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6515-5p 1 0 0
chr19:44813274|44813537 hsa-miR-3192-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6880-5p 1 0 0
chr19:44813274|44813537 hsa-miR-7847-3p 1 0 0
chr19:44813274|44813537 hsa-miR-4722-5p 1 0 0
chr19:44813274|44813537 hsa-miR-593-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6741-5p 1 1 0
chr19:44813274|44813537 hsa-miR-4474-3p 1 1 0
chr19:44813274|44813537 hsa-miR-197-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6772-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6732-5p 1 0 0
chr19:44813274|44813537 hsa-miR-3190-3p 1 0 0
chr19:44813274|44813537 hsa-miR-6798-5p 1 0 0
chr19:44813274|44813537 hsa-miR-7855-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6850-5p 1 0 0
chr19:44813274|44813537 hsa-miR-1226-5p 1 0 0
chr19:44813274|44813537 hsa-miR-4650-3p 1 0 0
chr19:44813274|44813537 hsa-miR-4690-5p 0 1 0
chr19:44813274|44813537 hsa-miR-4732-5p 1 0 0
chr19:44813274|44813537 hsa-miR-3648 1 0 0
chr19:44813274|44813537 hsa-miR-4787-5p 1 0 0
chr19:44813274|44813537 hsa-miR-149-3p 0 1 0
chr19:44813274|44813537 hsa-miR-3162-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6742-3p 0 1 0
chr19:44813274|44813537 hsa-miR-6886-5p 1 1 0
chr19:44813274|44813537 hsa-miR-6781-5p 1 0 0
chr19:44813274|44813537 hsa-miR-103b 0 1 0
chr19:44813274|44813537 hsa-miR-7846-3p 1 0 0
chr19:44813274|44813537 hsa-miR-1250-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6778-3p 0 1 0
chr19:44813274|44813537 hsa-miR-4746-3p 1 0 0
chr19:44813274|44813537 hsa-miR-6869-3p 0 1 0
chr19:44813274|44813537 hsa-miR-4632-3p 0 1 0
chr19:44813274|44813537 hsa-miR-3675-3p 0 1 0
chr19:44813274|44813537 hsa-miR-4763-3p 1 0 0
chr19:44813274|44813537 hsa-miR-6769b-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6787-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6865-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6870-5p 0 1 0
chr19:44813274|44813537 hsa-miR-1343-5p 1 1 0
chr19:44813274|44813537 hsa-miR-6726-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6752-5p 1 1 0
chr19:44813274|44813537 hsa-miR-6756-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6803-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6813-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6815-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6842-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6851-5p 0 1 0
chr19:44813274|44813537 hsa-miR-7110-5p 1 1 0
chr19:44813274|44813537 hsa-miR-11181-3p 1 0 0
chr19:44813274|44813537 hsa-miR-1249-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6751-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6788-5p 0 1 0
chr19:44813274|44813537 hsa-miR-7111-5p 1 1 0
chr19:44813274|44813537 hsa-miR-4728-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6846-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6848-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6883-5p 1 0 0
chr19:44813274|44813537 hsa-miR-4723-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6831-5p 1 1 0
chr19:44813274|44813537 hsa-miR-939-5p 1 0 0
chr19:44813274|44813537 hsa-miR-4758-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6511b-5p 1 0 0
chr19:44813274|44813537 hsa-miR-6731-5p 0 1 0
chr19:44813274|44813537 hsa-miR-6784-3p 0 1 0
chr19:44813274|44813537 hsa-miR-6529-5p 0 1 0
chr19:44813274|44813537 hsa-miR-7114-3p 0 1 0
chr19:44813274|44813537 hsa-miR-6744-3p 1 1 0
chr19:44813274|44813537 hsa-miR-6783-3p 0 1 0
chr19:44813274|44813537 hsa-miR-10394-5p 1 0 0
chr19:44813274|44813537 hsa-miR-524-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:44813274|44813537
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MEVPVEMNPGEQRRSAAGRGLGWVAGLWPG
Nucleotide Sequence CTGGAGGTGCCCGTAGAGATGAACCCAGGTGAGCAGCGCAGGAGCGCGGCGGGACGTGGGCTGGGGTGGGTGGCGGGGCTATGGCCTGGCTGA
CircID chr19:44813274|44813537
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MPPPPISPRGLHDQPHGPGGLGPALPHQHPLPAAPQG
Nucleotide Sequence CTGCCACCTCCCCCGATCTCTCCCAGAGGGCTACATGACCAGCCGCACGGTCCGGGAGGCCTCGGGCCTGCTCTCCCTCACCAGCACCCTCTACCTGCGGCTCCGCAAGGATGA
CircID chr19:44813274|44813537
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MADCHLPRSLPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDA
Nucleotide Sequence CTGGCTGACTGCCACCTCCCCCGATCTCTCCCAGAGGGCTACATGACCAGCCGCACGGTCCGGGAGGCCTCGGGCCTGCTCTCCCTCACCAGCACCCTCTACCTGCGGCTCCGCAAGGATGACCGAGACGCC
CircID chr19:44813274|44813537
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MLTWVHLYGHLQALPVAIPRDLGGRVP
Nucleotide Sequence CTGCTCACCTGGGTTCATCTCTACGGGCACCTCCAGGCGCTGCCCGTTGCGATACCACGTGATCTTGGGGGCCGGGTTCCC
CircID chr19:44813274|44813537
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence MGEIGGGGSQPGHSPATHPSPRPAALLRCSPGFISTGTSRRCPLRYHVILGAGF
Nucleotide Sequence CTGGGAGAGATCGGGGGAGGTGGCAGTCAGCCAGGCCATAGCCCCGCCACCCACCCCAGCCCACGTCCCGCCGCGCTCCTGCGCTGCTCACCTGGGTTCATCTCTACGGGCACCTCCAGGCGCTGCCCGTTGCGATACCACGTGATCTTGGGGGCCGGGTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab