CircRNA Information

General Information
circRNA Basic Information
CircID chr19:44907768|44907908
Strand +
CircType exon
Host Gene ENSG00000130203.8;
Algorism CIRI2;
Sequence CTGCTCAGACAGTGTCTGCACCCAGCGCAGGTAATCCCAAAAGCGACCCAGTGCCAGTTCCCAGCGCTGGCCGCTCTGCCACTCGGTCTGCTGGCGCAGCTCGGGCTCCGGCTCTGTCTCCACCGCTTGCTCCACCTTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:44907768|44907908 hsa-miR-558 0 0 1
chr19:44907768|44907908 hsa-miR-922 0 0 1
chr19:44907768|44907908 hsa-miR-1203 0 1 1
chr19:44907768|44907908 hsa-miR-1292-5p 0 0 1
chr19:44907768|44907908 hsa-miR-1292-3p 0 0 1
chr19:44907768|44907908 hsa-miR-769-3p 0 0 1
chr19:44907768|44907908 hsa-miR-450b-3p 0 0 1
chr19:44907768|44907908 hsa-miR-886-5p 0 0 1
chr19:44907768|44907908 hsa-miR-638 1 0 0
chr19:44907768|44907908 hsa-miR-663a 1 0 0
chr19:44907768|44907908 hsa-miR-760 1 0 0
chr19:44907768|44907908 hsa-miR-1270 1 0 0
chr19:44907768|44907908 hsa-miR-1539 0 1 0
chr19:44907768|44907908 hsa-miR-2861 1 0 0
chr19:44907768|44907908 hsa-miR-4321 1 0 0
chr19:44907768|44907908 hsa-miR-4430 1 0 0
chr19:44907768|44907908 hsa-miR-3135b 1 0 0
chr19:44907768|44907908 hsa-miR-4479 1 0 0
chr19:44907768|44907908 hsa-miR-4507 1 0 0
chr19:44907768|44907908 hsa-miR-4516 1 0 0
chr19:44907768|44907908 hsa-miR-4530 0 1 0
chr19:44907768|44907908 hsa-miR-3960 1 0 0
chr19:44907768|44907908 hsa-miR-4739 1 0 0
chr19:44907768|44907908 hsa-miR-6081 1 0 0
chr19:44907768|44907908 hsa-miR-6090 1 0 0
chr19:44907768|44907908 hsa-miR-8089 1 1 0
chr19:44907768|44907908 hsa-miR-12115 1 0 0
chr19:44907768|44907908 hsa-miR-8071 1 0 0
chr19:44907768|44907908 hsa-miR-139-3p 1 0 0
chr19:44907768|44907908 hsa-miR-6880-5p 1 1 0
chr19:44907768|44907908 hsa-miR-7847-3p 1 0 0
chr19:44907768|44907908 hsa-miR-4695-5p 1 0 0
chr19:44907768|44907908 hsa-miR-4722-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6820-5p 1 0 0
chr19:44907768|44907908 hsa-miR-197-5p 1 0 0
chr19:44907768|44907908 hsa-miR-5589-5p 1 1 0
chr19:44907768|44907908 hsa-miR-6776-5p 0 1 0
chr19:44907768|44907908 hsa-miR-6772-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6810-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6786-5p 1 0 0
chr19:44907768|44907908 hsa-miR-204-3p 1 1 0
chr19:44907768|44907908 hsa-miR-4690-5p 1 1 0
chr19:44907768|44907908 hsa-miR-6720-3p 1 0 0
chr19:44907768|44907908 hsa-miR-6513-5p 0 1 0
chr19:44907768|44907908 hsa-miR-4746-3p 1 0 0
chr19:44907768|44907908 hsa-miR-4761-5p 1 0 0
chr19:44907768|44907908 hsa-miR-3140-3p 0 1 0
chr19:44907768|44907908 hsa-miR-5089-5p 0 1 0
chr19:44907768|44907908 hsa-miR-2277-5p 1 0 0
chr19:44907768|44907908 hsa-miR-96-5p 0 1 0
chr19:44907768|44907908 hsa-miR-1207-5p 1 0 0
chr19:44907768|44907908 hsa-miR-4763-3p 1 1 0
chr19:44907768|44907908 hsa-miR-6787-5p 1 0 0
chr19:44907768|44907908 hsa-miR-1343-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6726-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6756-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6769a-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6815-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6851-5p 1 0 0
chr19:44907768|44907908 hsa-miR-1249-5p 1 0 0
chr19:44907768|44907908 hsa-miR-10396b-5p 1 0 0
chr19:44907768|44907908 hsa-miR-328-5p 1 0 0
chr19:44907768|44907908 hsa-miR-4726-5p 1 0 0
chr19:44907768|44907908 hsa-miR-4749-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6795-5p 1 0 0
chr19:44907768|44907908 hsa-miR-4723-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6885-5p 1 0 0
chr19:44907768|44907908 hsa-miR-939-5p 1 0 0
chr19:44907768|44907908 hsa-miR-1238-5p 1 0 0
chr19:44907768|44907908 hsa-miR-4758-5p 1 0 0
chr19:44907768|44907908 hsa-miR-3940-5p 1 0 0
chr19:44907768|44907908 hsa-miR-6855-5p 1 1 0
chr19:44907768|44907908 hsa-miR-4646-5p 0 1 0
chr19:44907768|44907908 hsa-miR-9851-5p 1 0 0
chr19:44907768|44907908 hsa-miR-4676-5p 1 0 0
chr19:44907768|44907908 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:44907768|44907908
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence LLRQCLHPAQVIPKATQCQFPALAALPLGLLAQLGLRLCLHRLLHLG
Nucleotide Sequence CTGCTCAGACAGTGTCTGCACCCAGCGCAGGTAATCCCAAAAGCGACCCAGTGCCAGTTCCCAGCGCTGGCCGCTCTGCCACTCGGTCTGCTGGCGCAGCTCGGGCTCCGGCTCTGTCTCCACCGCTTGCTCCACCTTGGC
CircID chr19:44907768|44907908
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQ
Nucleotide Sequence CTGCGCCAGCAGACCGAGTGGCAGAGCGGCCAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATTACCTGCGCTGGGTGCAGACACTGTCTGAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab