CircRNA Information

General Information
circRNA Basic Information
CircID chr19:44992319|44992677
Strand +
CircType exon
Host Gene ENSG00000104853.14;
Algorism CIRI2;
Sequence TCGTTGACTCGGGTGGGGTCGACGCGGTAGATCCACCGTTGGTAGAGGTAGATGAAGAAAACCACATCTGGAGAGGGGTGGGAGGCAGTGTGAGGTCGGGCTGGCCCGTCCACAGCCAGGTGGGCCTGGGTGGAGAGGGCGTGATGCAAGGGCGGGGCCGAGCCCCCTCAGACTGAGCACCCCATCTGGGGCCGTGGCACCCCCTCAGGCCTGGGCCCTAAAGACTGCCTCAGGGCCCTGTTCCGGTGGGAGCTCCCACCTGCCCACCGGGCCTCACCGTCCCGCAGGCAGCCGATCCGGTACATAACGGGCATCTTGATGACAAAGGCGAACAGGTCGTCGATGAATGTGTTGAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:44992319|44992677 hsa-miR-181c-5p 0 0 1
chr19:44992319|44992677 hsa-miR-181c-3p 0 0 1
chr19:44992319|44992677 hsa-miR-184 0 0 1
chr19:44992319|44992677 hsa-miR-181d-5p 0 0 1
chr19:44992319|44992677 hsa-miR-181d-3p 0 0 1
chr19:44992319|44992677 hsa-miR-551a 0 0 1
chr19:44992319|44992677 hsa-miR-551b-5p 0 0 1
chr19:44992319|44992677 hsa-miR-551b-3p 0 0 1
chr19:44992319|44992677 hsa-miR-608 0 0 1
chr19:44992319|44992677 hsa-miR-622 0 0 1
chr19:44992319|44992677 hsa-miR-1296-5p 0 0 1
chr19:44992319|44992677 hsa-miR-1296-3p 0 0 1
chr19:44992319|44992677 hsa-miR-766-5p 0 0 1
chr19:44992319|44992677 hsa-miR-766-3p 0 0 1
chr19:44992319|44992677 hsa-miR-541-5p 0 0 1
chr19:44992319|44992677 hsa-miR-541-3p 0 0 1
chr19:44992319|44992677 hsa-miR-920 0 0 1
chr19:44992319|44992677 hsa-miR-1227-5p 0 0 1
chr19:44992319|44992677 hsa-miR-1227-3p 0 0 1
chr19:44992319|44992677 hsa-miR-1291 0 0 1
chr19:44992319|44992677 hsa-miR-1249-5p 0 0 1
chr19:44992319|44992677 hsa-miR-1249-3p 0 0 1
chr19:44992319|44992677 hsa-miR-1827 0 0 1
chr19:44992319|44992677 hsa-miR-532-3p 0 0 1
chr19:44992319|44992677 hsa-miR-423-5p 0 0 1
chr19:44992319|44992677 hsa-miR-654-5p 0 0 1
chr19:44992319|44992677 hsa-miR-1224-3p 0 0 1
chr19:44992319|44992677 hsa-miR-576-3p 0 0 1
chr19:44992319|44992677 hsa-miR-342-5p 0 0 1
chr19:44992319|44992677 hsa-miR-125a-5p 0 0 1
chr19:44992319|44992677 hsa-miR-342-3p 1 0 1
chr19:44992319|44992677 hsa-miR-1260 0 0 1
chr19:44992319|44992677 hsa-miR-1280 0 0 1
chr19:44992319|44992677 hsa-miR-125b 0 0 1
chr19:44992319|44992677 hsa-miR-181a 0 0 1
chr19:44992319|44992677 hsa-miR-181b 0 0 1
chr19:44992319|44992677 hsa-miR-1538 1 0 0
chr19:44992319|44992677 hsa-miR-4298 1 0 0
chr19:44992319|44992677 hsa-miR-23c 1 0 0
chr19:44992319|44992677 hsa-miR-3621 1 0 0
chr19:44992319|44992677 hsa-miR-4706 1 0 0
chr19:44992319|44992677 hsa-miR-4734 1 0 0
chr19:44992319|44992677 hsa-miR-4741 1 0 0
chr19:44992319|44992677 hsa-miR-6081 1 0 0
chr19:44992319|44992677 hsa-miR-12119 1 0 0
chr19:44992319|44992677 hsa-miR-4665-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6765-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6836-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6861-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6089 1 0 0
chr19:44992319|44992677 hsa-miR-6757-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6726-3p 1 0 0
chr19:44992319|44992677 hsa-miR-1915-5p 1 0 0
chr19:44992319|44992677 hsa-miR-656-5p 1 0 0
chr19:44992319|44992677 hsa-miR-5008-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6850-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6882-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6858-3p 1 0 0
chr19:44992319|44992677 hsa-miR-4436b-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6786-5p 1 0 0
chr19:44992319|44992677 hsa-miR-1226-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6894-3p 1 0 0
chr19:44992319|44992677 hsa-miR-5001-3p 1 0 0
chr19:44992319|44992677 hsa-miR-4743-5p 1 0 0
chr19:44992319|44992677 hsa-miR-4695-3p 1 0 0
chr19:44992319|44992677 hsa-miR-4638-5p 1 0 0
chr19:44992319|44992677 hsa-miR-4758-3p 1 0 0
chr19:44992319|44992677 hsa-miR-7112-3p 1 0 0
chr19:44992319|44992677 hsa-miR-3940-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6886-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6760-3p 1 0 0
chr19:44992319|44992677 hsa-miR-3670 1 0 0
chr19:44992319|44992677 hsa-miR-3620-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6515-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6890-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6752-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6756-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6803-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6754-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6836-5p 1 0 0
chr19:44992319|44992677 hsa-miR-328-5p 1 0 0
chr19:44992319|44992677 hsa-miR-939-5p 1 0 0
chr19:44992319|44992677 hsa-miR-3085-5p 1 0 0
chr19:44992319|44992677 hsa-miR-4665-5p 1 0 0
chr19:44992319|44992677 hsa-miR-324-3p 1 0 0
chr19:44992319|44992677 hsa-miR-6724-5p 1 0 0
chr19:44992319|44992677 hsa-miR-6791-5p 1 0 0
chr19:44992319|44992677 hsa-miR-10392-3p 1 0 0
chr19:44992319|44992677 hsa-miR-1234-3p 1 0 0
chr19:44992319|44992677 hsa-miR-4769-3p 1 0 0
chr19:44992319|44992677 hsa-miR-412-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:44992319|44992677
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MGPKDCLRALFRWELPPAHRASPSRRQPIRYITGILMTKANRSSMNVLR
Nucleotide Sequence CTGGGCCCTAAAGACTGCCTCAGGGCCCTGTTCCGGTGGGAGCTCCCACCTGCCCACCGGGCCTCACCGTCCCGCAGGCAGCCGATCCGGTACATAACGGGCATCTTGATGACAAAGGCGAACAGGTCGTCGATGAATGTGTTGAGG
CircID chr19:44992319|44992677
ORF Type ORF2
Protein Length 79
Nucleotide Length 240
Protein Sequence MERGGRQCEVGLARPQPGGPGWRGRDARAGPSPLRLSTPSGAVAPPQAWALKTASGPCSGGSSHLPTGPHRPAGSRSGT
Nucleotide Sequence CTGGAGAGGGGTGGGAGGCAGTGTGAGGTCGGGCTGGCCCGTCCACAGCCAGGTGGGCCTGGGTGGAGAGGGCGTGATGCAAGGGCGGGGCCGAGCCCCCTCAGACTGAGCACCCCATCTGGGGCCGTGGCACCCCCTCAGGCCTGGGCCCTAAAGACTGCCTCAGGGCCCTGTTCCGGTGGGAGCTCCCACCTGCCCACCGGGCCTCACCGTCCCGCAGGCAGCCGATCCGGTACATAA
CircID chr19:44992319|44992677
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MVEVDEENHIWRGVGGSVRSGWPVHSQVGLGGEGVMQGRGRAPSD
Nucleotide Sequence TTGGTAGAGGTAGATGAAGAAAACCACATCTGGAGAGGGGTGGGAGGCAGTGTGAGGTCGGGCTGGCCCGTCCACAGCCAGGTGGGCCTGGGTGGAGAGGGCGTGATGCAAGGGCGGGGCCGAGCCCCCTCAGACTGA
CircID chr19:44992319|44992677
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MPQGPVPVGAPTCPPGLTVPQAADPVHNGHLDDKGEQVVDECVEG
Nucleotide Sequence CTGCCTCAGGGCCCTGTTCCGGTGGGAGCTCCCACCTGCCCACCGGGCCTCACCGTCCCGCAGGCAGCCGATCCGGTACATAACGGGCATCTTGATGACAAAGGCGAACAGGTCGTCGATGAATGTGTTGAGGGC
CircID chr19:44992319|44992677
ORF Type ORF5
Protein Length 55
Nucleotide Length 168
Protein Sequence MFAFVIKMPVMYRIGCLRDGEARWAGGSSHRNRALRQSLGPRPEGVPRPQMGCSV
Nucleotide Sequence CTGTTCGCCTTTGTCATCAAGATGCCCGTTATGTACCGGATCGGCTGCCTGCGGGACGGTGAGGCCCGGTGGGCAGGTGGGAGCTCCCACCGGAACAGGGCCCTGAGGCAGTCTTTAGGGCCCAGGCCTGAGGGGGTGCCACGGCCCCAGATGGGGTGCTCAGTCTGA
CircID chr19:44992319|44992677
ORF Type ORF6
Protein Length 49
Nucleotide Length 147
Protein Sequence MHHALSTQAHLAVDGPARPHTASHPSPDVVFFIYLYQRWIYRVDPTRVN
Nucleotide Sequence TTGCATCACGCCCTCTCCACCCAGGCCCACCTGGCTGTGGACGGGCCAGCCCGACCTCACACTGCCTCCCACCCCTCTCCAGATGTGGTTTTCTTCATCTACCTCTACCAACGGTGGATCTACCGCGTCGACCCCACCCGAGTCAAC
CircID chr19:44992319|44992677
ORF Type ORF7
Protein Length 31
Nucleotide Length 96
Protein Sequence MSSRCPLCTGSAACGTVRPGGQVGAPTGTGP
Nucleotide Sequence TTGTCATCAAGATGCCCGTTATGTACCGGATCGGCTGCCTGCGGGACGGTGAGGCCCGGTGGGCAGGTGGGAGCTCCCACCGGAACAGGGCCCTGA
CircID chr19:44992319|44992677
ORF Type ORF8
Protein Length 69
Nucleotide Length 207
Protein Sequence MRGCHGPRWGAQSEGARPRPCITPSPPRPTWLWTGQPDLTLPPTPLQMWFSSSTSTNGGSTASTPPEST
Nucleotide Sequence CTGAGGGGGTGCCACGGCCCCAGATGGGGTGCTCAGTCTGAGGGGGCTCGGCCCCGCCCTTGCATCACGCCCTCTCCACCCAGGCCCACCTGGCTGTGGACGGGCCAGCCCGACCTCACACTGCCTCCCACCCCTCTCCAGATGTGGTTTTCTTCATCTACCTCTACCAACGGTGGATCTACCGCGTCGACCCCACCCGAGTCAACG
CircID chr19:44992319|44992677
ORF Type ORF9
Protein Length 57
Nucleotide Length 171
Protein Sequence MRGLGPALASRPLHPGPPGCGRASPTSHCLPPLSRCGFLHLPLPTVDLPRRPHPSQR
Nucleotide Sequence CTGAGGGGGCTCGGCCCCGCCCTTGCATCACGCCCTCTCCACCCAGGCCCACCTGGCTGTGGACGGGCCAGCCCGACCTCACACTGCCTCCCACCCCTCTCCAGATGTGGTTTTCTTCATCTACCTCTACCAACGGTGGATCTACCGCGTCGACCCCACCCGAGTCAACGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab