CircRNA Information

General Information
circRNA Basic Information
CircID chr19:44992637|44992797
Strand -
CircType exon
Host Gene ENSG00000104853.14;
Algorism CIRI2;
Sequence CAACGGTGGATCTACCGCGTCGACCCCACCCGAGTCAACGAGTTTGGCATGAGTGGAGAAGACCCCACAGCTGCCGCCCCCGTGGCCGAGGTTCCCACAGCAGCAGGGGCCCTCACGCCCACACCTGCACCCACCACGACCACCGCCACCAGGGAGGAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:44992637|44992797 hsa-miR-370-5p 0 0 1
chr19:44992637|44992797 hsa-miR-370-3p 0 0 1
chr19:44992637|44992797 hsa-miR-585-5p 0 0 1
chr19:44992637|44992797 hsa-miR-585-3p 0 0 1
chr19:44992637|44992797 hsa-miR-657 0 0 1
chr19:44992637|44992797 hsa-miR-541-5p 0 0 1
chr19:44992637|44992797 hsa-miR-541-3p 0 0 1
chr19:44992637|44992797 hsa-miR-942-5p 0 0 1
chr19:44992637|44992797 hsa-miR-942-3p 0 0 1
chr19:44992637|44992797 hsa-miR-1292-5p 0 0 1
chr19:44992637|44992797 hsa-miR-1292-3p 0 0 1
chr19:44992637|44992797 hsa-miR-296-5p 0 0 1
chr19:44992637|44992797 hsa-miR-491-5p 0 0 1
chr19:44992637|44992797 hsa-miR-615-5p 0 0 1
chr19:44992637|44992797 hsa-miR-193a-5p 0 0 1
chr19:44992637|44992797 hsa-miR-654-5p 0 0 1
chr19:44992637|44992797 hsa-miR-515-5p 0 0 1
chr19:44992637|44992797 hsa-miR-323-5p 0 0 1
chr19:44992637|44992797 hsa-miR-1268 0 0 1
chr19:44992637|44992797 hsa-miR-602 0 1 0
chr19:44992637|44992797 hsa-miR-608 1 0 0
chr19:44992637|44992797 hsa-miR-1268a 1 0 0
chr19:44992637|44992797 hsa-miR-3196 1 1 0
chr19:44992637|44992797 hsa-miR-4322 0 1 0
chr19:44992637|44992797 hsa-miR-3665 0 1 0
chr19:44992637|44992797 hsa-miR-1268b 1 0 0
chr19:44992637|44992797 hsa-miR-4440 0 1 0
chr19:44992637|44992797 hsa-miR-4467 1 0 0
chr19:44992637|44992797 hsa-miR-4488 0 1 0
chr19:44992637|44992797 hsa-miR-3960 1 0 0
chr19:44992637|44992797 hsa-miR-4651 1 0 0
chr19:44992637|44992797 hsa-miR-7704 1 1 0
chr19:44992637|44992797 hsa-miR-8089 1 0 0
chr19:44992637|44992797 hsa-miR-9901 1 0 0
chr19:44992637|44992797 hsa-miR-134-3p 0 1 0
chr19:44992637|44992797 hsa-miR-323a-5p 0 1 0
chr19:44992637|44992797 hsa-miR-4665-3p 1 0 0
chr19:44992637|44992797 hsa-miR-3934-5p 0 1 0
chr19:44992637|44992797 hsa-miR-6820-5p 1 1 0
chr19:44992637|44992797 hsa-miR-6741-5p 1 1 0
chr19:44992637|44992797 hsa-miR-6776-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6742-5p 0 1 0
chr19:44992637|44992797 hsa-miR-3180-3p 1 1 0
chr19:44992637|44992797 hsa-miR-6748-5p 0 1 0
chr19:44992637|44992797 hsa-miR-6772-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6793-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6796-5p 0 1 0
chr19:44992637|44992797 hsa-miR-6732-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6805-5p 1 1 0
chr19:44992637|44992797 hsa-miR-6782-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6740-3p 0 1 0
chr19:44992637|44992797 hsa-miR-6786-5p 0 1 0
chr19:44992637|44992797 hsa-miR-1226-5p 1 0 0
chr19:44992637|44992797 hsa-miR-4787-5p 1 1 0
chr19:44992637|44992797 hsa-miR-7160-3p 0 1 0
chr19:44992637|44992797 hsa-miR-1306-3p 1 1 0
chr19:44992637|44992797 hsa-miR-412-5p 0 1 0
chr19:44992637|44992797 hsa-miR-10400-5p 1 1 0
chr19:44992637|44992797 hsa-miR-1233-5p 1 1 0
chr19:44992637|44992797 hsa-miR-6769b-5p 0 1 0
chr19:44992637|44992797 hsa-miR-6816-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6865-5p 1 0 0
chr19:44992637|44992797 hsa-miR-3180 1 1 0
chr19:44992637|44992797 hsa-miR-6737-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6752-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6756-5p 1 1 0
chr19:44992637|44992797 hsa-miR-6769a-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6803-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6842-5p 1 0 0
chr19:44992637|44992797 hsa-miR-1237-5p 1 1 0
chr19:44992637|44992797 hsa-miR-328-5p 1 0 0
chr19:44992637|44992797 hsa-miR-4701-3p 1 0 0
chr19:44992637|44992797 hsa-miR-4749-5p 1 0 0
chr19:44992637|44992797 hsa-miR-4697-5p 1 0 0
chr19:44992637|44992797 hsa-miR-939-5p 1 0 0
chr19:44992637|44992797 hsa-miR-6766-5p 0 1 0
chr19:44992637|44992797 hsa-miR-6810-3p 0 1 0
chr19:44992637|44992797 hsa-miR-6829-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:44992637|44992797
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MSGEDPTAAAPVAEVPTAAGALTPTPAPTTTTATREE
Nucleotide Sequence ATGAGTGGAGAAGACCCCACAGCTGCCGCCCCCGTGGCCGAGGTTCCCACAGCAGCAGGGGCCCTCACGCCCACACCTGCACCCACCACGACCACCGCCACCAGGGAGGAG
CircID chr19:44992637|44992797
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MPPPWPRFPQQQGPSRPHLHPPRPPPPGRR
Nucleotide Sequence CTGCCGCCCCCGTGGCCGAGGTTCCCACAGCAGCAGGGGCCCTCACGCCCACACCTGCACCCACCACGACCACCGCCACCAGGGAGGAGG
CircID chr19:44992637|44992797
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MVAVVVVGAGVGVRAPAAVGTSATGAAAVGSSPLMPNSLTRVGSTR
Nucleotide Sequence CTGGTGGCGGTGGTCGTGGTGGGTGCAGGTGTGGGCGTGAGGGCCCCTGCTGCTGTGGGAACCTCGGCCACGGGGGCGGCAGCTGTGGGGTCTTCTCCACTCATGCCAAACTCGTTGACTCGGGTGGGGTCGACGCGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab