CircRNA Information

General Information
circRNA Basic Information
CircID chr19:45020944|45021109
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCGCCTCCGGGCTCAAGGGATTCTCCTGCCGCAGCCTCCTGAGTAGCTGGGACTACAGGCGCACACTACCATGCCTGGCTAATTTTTGTGTTTTCAGTAGAGACGGAGTTTCGCTACATTGCCCAAGCTGGTCTCAAACTCCTGAACTCAAGCGATCTGCCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:45020944|45021109 hsa-miR-510-5p 0 0 1
chr19:45020944|45021109 hsa-miR-510-3p 0 0 1
chr19:45020944|45021109 hsa-miR-570-5p 0 0 1
chr19:45020944|45021109 hsa-miR-570-3p 0 0 1
chr19:45020944|45021109 hsa-miR-575 0 0 1
chr19:45020944|45021109 hsa-miR-604 0 0 1
chr19:45020944|45021109 hsa-miR-623 0 0 1
chr19:45020944|45021109 hsa-miR-635 0 1 1
chr19:45020944|45021109 hsa-miR-648 0 0 1
chr19:45020944|45021109 hsa-miR-933 0 0 1
chr19:45020944|45021109 hsa-miR-512-5p 0 0 1
chr19:45020944|45021109 hsa-miR-1225-3p 0 0 1
chr19:45020944|45021109 hsa-miR-769-5p 1 0 1
chr19:45020944|45021109 hsa-miR-485-5p 0 1 1
chr19:45020944|45021109 hsa-miR-188-5p 0 1 1
chr19:45020944|45021109 hsa-miR-142-3p 0 0 1
chr19:45020944|45021109 hsa-miR-1233 0 0 1
chr19:45020944|45021109 hsa-miR-638 1 0 0
chr19:45020944|45021109 hsa-miR-762 1 0 0
chr19:45020944|45021109 hsa-miR-665 1 1 0
chr19:45020944|45021109 hsa-miR-3908 0 1 0
chr19:45020944|45021109 hsa-miR-3937 1 0 0
chr19:45020944|45021109 hsa-miR-4449 1 0 0
chr19:45020944|45021109 hsa-miR-4453 0 1 0
chr19:45020944|45021109 hsa-miR-4538 0 1 0
chr19:45020944|45021109 hsa-miR-3960 1 0 0
chr19:45020944|45021109 hsa-miR-4656 1 0 0
chr19:45020944|45021109 hsa-miR-4692 0 1 0
chr19:45020944|45021109 hsa-miR-4780 0 1 0
chr19:45020944|45021109 hsa-miR-5787 1 0 0
chr19:45020944|45021109 hsa-miR-7974 1 0 0
chr19:45020944|45021109 hsa-miR-3157-5p 1 0 0
chr19:45020944|45021109 hsa-miR-4786-5p 1 0 0
chr19:45020944|45021109 hsa-miR-4768-3p 0 1 0
chr19:45020944|45021109 hsa-miR-4695-5p 1 1 0
chr19:45020944|45021109 hsa-miR-4722-5p 1 1 0
chr19:45020944|45021109 hsa-miR-6762-3p 1 0 0
chr19:45020944|45021109 hsa-miR-6798-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6771-5p 1 0 0
chr19:45020944|45021109 hsa-miR-4776-5p 1 0 0
chr19:45020944|45021109 hsa-miR-1911-3p 0 1 0
chr19:45020944|45021109 hsa-miR-6720-3p 0 1 0
chr19:45020944|45021109 hsa-miR-20b-3p 0 1 0
chr19:45020944|45021109 hsa-miR-875-3p 0 1 0
chr19:45020944|45021109 hsa-miR-3664-5p 0 1 0
chr19:45020944|45021109 hsa-miR-10400-5p 1 0 0
chr19:45020944|45021109 hsa-miR-1207-5p 1 0 0
chr19:45020944|45021109 hsa-miR-4763-3p 1 0 0
chr19:45020944|45021109 hsa-miR-6775-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6752-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6803-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6774-5p 0 1 0
chr19:45020944|45021109 hsa-miR-4632-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6846-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6848-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6858-5p 1 0 0
chr19:45020944|45021109 hsa-miR-6883-5p 1 0 0
chr19:45020944|45021109 hsa-miR-9851-3p 1 0 0
chr19:45020944|45021109 hsa-miR-6884-5p 0 1 0
chr19:45020944|45021109 hsa-miR-6827-3p 0 1 0
chr19:45020944|45021109 hsa-miR-4684-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:45020944|45021109
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MSSWDYRRTLPCLANFCVFSRDGVSLHCPSWSQTPELKRSAC
Nucleotide Sequence CTGAGTAGCTGGGACTACAGGCGCACACTACCATGCCTGGCTAATTTTTGTGTTTTCAGTAGAGACGGAGTTTCGCTACATTGCCCAAGCTGGTCTCAAACTCCTGAACTCAAGCGATCTGCCTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab