CircRNA Information

General Information
circRNA Basic Information
CircID chr19:45181424|45181630
Strand +
CircType exon
Host Gene ENSG00000189114.6;
Algorism CIRI2;
Sequence ACAGGTGAAAAGGAGCAGAAAGAGACTGCTAACCCCAGTCCCTGAGCCAAGTCAGAAATCCAAGTCCTTTTATAGCATCCAGGAGCCAAATGTAGTGAAATCCACACATCATATCGTTCTTATCTGCAAAGTGCTGTCATCTGGCGCTGAAAGCACCAGGACTGGGCTGAATTGGGCCCGAAGTGCCTGAAGGGTGTCACTTTAGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:45181424|45181630 hsa-miR-17-5p 0 0 1
chr19:45181424|45181630 hsa-miR-17-3p 0 0 1
chr19:45181424|45181630 hsa-miR-20a-5p 0 0 1
chr19:45181424|45181630 hsa-miR-20a-3p 0 0 1
chr19:45181424|45181630 hsa-miR-93-5p 0 0 1
chr19:45181424|45181630 hsa-miR-93-3p 0 0 1
chr19:45181424|45181630 hsa-miR-106a-5p 0 0 1
chr19:45181424|45181630 hsa-miR-106a-3p 0 0 1
chr19:45181424|45181630 hsa-miR-106b-5p 0 0 1
chr19:45181424|45181630 hsa-miR-106b-3p 0 0 1
chr19:45181424|45181630 hsa-miR-345-5p 0 0 1
chr19:45181424|45181630 hsa-miR-345-3p 0 0 1
chr19:45181424|45181630 hsa-miR-20b-5p 0 0 1
chr19:45181424|45181630 hsa-miR-20b-3p 0 0 1
chr19:45181424|45181630 hsa-miR-519d-5p 0 0 1
chr19:45181424|45181630 hsa-miR-519d-3p 0 0 1
chr19:45181424|45181630 hsa-miR-890 0 0 1
chr19:45181424|45181630 hsa-miR-1290 1 0 1
chr19:45181424|45181630 hsa-miR-1266-5p 0 0 1
chr19:45181424|45181630 hsa-miR-1266-3p 0 0 1
chr19:45181424|45181630 hsa-miR-1272 0 0 1
chr19:45181424|45181630 hsa-miR-1322 0 0 1
chr19:45181424|45181630 hsa-miR-767-3p 0 0 1
chr19:45181424|45181630 hsa-miR-876-5p 0 0 1
chr19:45181424|45181630 hsa-miR-548b-3p 0 0 1
chr19:45181424|45181630 hsa-miR-644 0 0 1
chr19:45181424|45181630 hsa-miR-544 0 0 1
chr19:45181424|45181630 hsa-miR-24 0 0 1
chr19:45181424|45181630 hsa-miR-147 0 0 1
chr19:45181424|45181630 hsa-miR-923 0 0 1
chr19:45181424|45181630 hsa-miR-520h 0 1 0
chr19:45181424|45181630 hsa-miR-760 1 0 0
chr19:45181424|45181630 hsa-miR-1182 1 0 0
chr19:45181424|45181630 hsa-miR-3131 1 0 0
chr19:45181424|45181630 hsa-miR-3181 1 1 0
chr19:45181424|45181630 hsa-miR-4505 1 0 0
chr19:45181424|45181630 hsa-miR-4507 1 0 0
chr19:45181424|45181630 hsa-miR-6085 1 1 0
chr19:45181424|45181630 hsa-miR-12128 0 1 0
chr19:45181424|45181630 hsa-miR-150-3p 1 0 0
chr19:45181424|45181630 hsa-miR-4687-3p 1 0 0
chr19:45181424|45181630 hsa-miR-23b-5p 1 0 0
chr19:45181424|45181630 hsa-miR-659-3p 1 1 0
chr19:45181424|45181630 hsa-miR-520g-3p 0 1 0
chr19:45181424|45181630 hsa-miR-23a-5p 1 0 0
chr19:45181424|45181630 hsa-miR-221-3p 0 1 0
chr19:45181424|45181630 hsa-miR-5004-3p 0 1 0
chr19:45181424|45181630 hsa-miR-4446-3p 1 0 0
chr19:45181424|45181630 hsa-miR-6828-3p 0 1 0
chr19:45181424|45181630 hsa-miR-1910-5p 0 1 0
chr19:45181424|45181630 hsa-miR-222-3p 0 1 0
chr19:45181424|45181630 hsa-miR-6813-5p 1 1 0
chr19:45181424|45181630 hsa-miR-3199 0 1 0
chr19:45181424|45181630 hsa-miR-365a-5p 1 0 0
chr19:45181424|45181630 hsa-miR-365b-5p 1 0 0
chr19:45181424|45181630 hsa-miR-6855-5p 0 1 0
chr19:45181424|45181630 hsa-miR-5009-5p 0 1 0
chr19:45181424|45181630 hsa-miR-4690-3p 0 1 0
chr19:45181424|45181630 hsa-miR-6715b-5p 0 1 0
chr19:45181424|45181630 hsa-miR-3136-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:45181424|45181630
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence MLTPVPEPSQKSKSFYSIQEPNVVKSTHHIVLICKVLSSGAESTRTGLNWARSA
Nucleotide Sequence CTGCTAACCCCAGTCCCTGAGCCAAGTCAGAAATCCAAGTCCTTTTATAGCATCCAGGAGCCAAATGTAGTGAAATCCACACATCATATCGTTCTTATCTGCAAAGTGCTGTCATCTGGCGCTGAAAGCACCAGGACTGGGCTGAATTGGGCCCGAAGTGCCTGA
CircID chr19:45181424|45181630
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MAPGCYKRTWISDLAQGLGLAVSFCSFSP
Nucleotide Sequence TTGGCTCCTGGATGCTATAAAAGGACTTGGATTTCTGACTTGGCTCAGGGACTGGGGTTAGCAGTCTCTTTCTGCTCCTTTTCACCT
CircID chr19:45181424|45181630
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MMCGFHYIWLLDAIKGLGFLTWLRDWG
Nucleotide Sequence ATGATGTGTGGATTTCACTACATTTGGCTCCTGGATGCTATAAAAGGACTTGGATTTCTGACTTGGCTCAGGGACTGGGGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab