CircRNA Information

General Information
circRNA Basic Information
CircID chr19:45379778|45379984
Strand -
CircType exon
Host Gene ENSG00000104881.13;
Algorism CIRI2;
Sequence CCCAAGACTGCTGGGAGAGATGGTGTCAGCAGTGACTCCCAGGAATATCCAGTGGTGTGGTGGCCCATCCCAGGCCCGGCTGGGCAGGTGGCTGGCTTGCTGGGGGATGTGATGATGGTGGTAGGCATGGGAGGCACTTTGGACGGGATCTGATTTGGCAAAAGGAAGTGGTTTCCTGTCCCCAGTGATTTCCAGCCCTTCCCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:45379778|45379984 hsa-miR-17-5p 0 0 1
chr19:45379778|45379984 hsa-miR-17-3p 0 0 1
chr19:45379778|45379984 hsa-miR-20a-5p 0 0 1
chr19:45379778|45379984 hsa-miR-20a-3p 0 0 1
chr19:45379778|45379984 hsa-miR-93-5p 0 0 1
chr19:45379778|45379984 hsa-miR-93-3p 0 0 1
chr19:45379778|45379984 hsa-miR-106a-5p 0 0 1
chr19:45379778|45379984 hsa-miR-106a-3p 0 0 1
chr19:45379778|45379984 hsa-miR-150-5p 0 0 1
chr19:45379778|45379984 hsa-miR-150-3p 0 0 1
chr19:45379778|45379984 hsa-miR-106b-5p 0 0 1
chr19:45379778|45379984 hsa-miR-106b-3p 0 0 1
chr19:45379778|45379984 hsa-miR-34b-5p 0 0 1
chr19:45379778|45379984 hsa-miR-34b-3p 0 0 1
chr19:45379778|45379984 hsa-miR-20b-5p 0 0 1
chr19:45379778|45379984 hsa-miR-20b-3p 0 0 1
chr19:45379778|45379984 hsa-miR-519e-5p 0 0 1
chr19:45379778|45379984 hsa-miR-519e-3p 0 0 1
chr19:45379778|45379984 hsa-miR-519d-5p 0 0 1
chr19:45379778|45379984 hsa-miR-519d-3p 0 0 1
chr19:45379778|45379984 hsa-miR-520g-5p 0 0 1
chr19:45379778|45379984 hsa-miR-520g-3p 0 0 1
chr19:45379778|45379984 hsa-miR-520h 0 1 1
chr19:45379778|45379984 hsa-miR-635 0 0 1
chr19:45379778|45379984 hsa-miR-661 0 0 1
chr19:45379778|45379984 hsa-miR-1243 0 0 1
chr19:45379778|45379984 hsa-miR-1247-5p 0 0 1
chr19:45379778|45379984 hsa-miR-1247-3p 0 0 1
chr19:45379778|45379984 hsa-miR-532-3p 0 0 1
chr19:45379778|45379984 hsa-miR-361-3p 0 0 1
chr19:45379778|45379984 hsa-miR-875-3p 0 1 1
chr19:45379778|45379984 hsa-miR-628-5p 0 1 1
chr19:45379778|45379984 hsa-miR-515-3p 0 0 1
chr19:45379778|45379984 hsa-miR-302e 0 1 0
chr19:45379778|45379984 hsa-miR-2861 1 1 0
chr19:45379778|45379984 hsa-miR-5100 1 1 0
chr19:45379778|45379984 hsa-miR-8089 0 1 0
chr19:45379778|45379984 hsa-miR-6836-3p 0 1 0
chr19:45379778|45379984 hsa-miR-145-3p 0 1 0
chr19:45379778|45379984 hsa-miR-3194-5p 0 1 0
chr19:45379778|45379984 hsa-miR-6810-5p 0 1 0
chr19:45379778|45379984 hsa-miR-6858-3p 1 1 0
chr19:45379778|45379984 hsa-miR-4436b-5p 1 0 0
chr19:45379778|45379984 hsa-miR-6852-5p 1 0 0
chr19:45379778|45379984 hsa-miR-4763-5p 0 1 0
chr19:45379778|45379984 hsa-miR-204-3p 0 1 0
chr19:45379778|45379984 hsa-miR-4640-5p 1 0 0
chr19:45379778|45379984 hsa-miR-6749-5p 1 1 0
chr19:45379778|45379984 hsa-miR-4446-3p 0 1 0
chr19:45379778|45379984 hsa-miR-6776-3p 0 1 0
chr19:45379778|45379984 hsa-miR-1237-3p 1 0 0
chr19:45379778|45379984 hsa-miR-6730-3p 0 1 0
chr19:45379778|45379984 hsa-miR-6778-3p 0 1 0
chr19:45379778|45379984 hsa-miR-6872-3p 0 1 0
chr19:45379778|45379984 hsa-miR-204-5p 1 0 0
chr19:45379778|45379984 hsa-miR-1255b-2-3p 1 1 0
chr19:45379778|45379984 hsa-miR-2116-3p 0 1 0
chr19:45379778|45379984 hsa-miR-4485-5p 0 1 0
chr19:45379778|45379984 hsa-miR-425-5p 0 1 0
chr19:45379778|45379984 hsa-miR-5001-5p 0 1 0
chr19:45379778|45379984 hsa-miR-6779-5p 0 1 0
chr19:45379778|45379984 hsa-miR-6777-5p 1 0 0
chr19:45379778|45379984 hsa-miR-4700-5p 0 1 0
chr19:45379778|45379984 hsa-miR-4667-5p 0 1 0
chr19:45379778|45379984 hsa-miR-302a-3p 0 1 0
chr19:45379778|45379984 hsa-miR-302c-3p 0 1 0
chr19:45379778|45379984 hsa-miR-302d-3p 0 1 0
chr19:45379778|45379984 hsa-miR-6792-3p 1 0 0
chr19:45379778|45379984 hsa-miR-4701-5p 0 1 0
chr19:45379778|45379984 hsa-miR-6783-3p 0 1 0
chr19:45379778|45379984 hsa-miR-33b-3p 0 1 0
chr19:45379778|45379984 hsa-miR-6506-5p 1 1 0
chr19:45379778|45379984 hsa-miR-664b-3p 1 0 0
chr19:45379778|45379984 hsa-miR-548aa 0 1 0
chr19:45379778|45379984 hsa-miR-548t-3p 0 1 0
chr19:45379778|45379984 hsa-miR-526b-3p 0 1 0
chr19:45379778|45379984 hsa-miR-302b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:45379778|45379984
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MLGEMVSAVTPRNIQWCGGPSQARLGRWLACWGM
Nucleotide Sequence CTGCTGGGAGAGATGGTGTCAGCAGTGACTCCCAGGAATATCCAGTGGTGTGGTGGCCCATCCCAGGCCCGGCTGGGCAGGTGGCTGGCTTGCTGGGGGATGTGA
CircID chr19:45379778|45379984
ORF Type ORF2
Protein Length 65
Nucleotide Length 195
Protein Sequence MEITGDRKPLPFAKSDPVQSASHAYHHHHIPQQASHLPSRAWDGPPHHWIFLGVTADTISPSSLG
Nucleotide Sequence CTGGAAATCACTGGGGACAGGAAACCACTTCCTTTTGCCAAATCAGATCCCGTCCAAAGTGCCTCCCATGCCTACCACCATCATCACATCCCCCAGCAAGCCAGCCACCTGCCCAGCCGGGCCTGGGATGGGCCACCACACCACTGGATATTCCTGGGAGTCACTGCTGACACCATCTCTCCCAGCAGTCTTGGG
CircID chr19:45379778|45379984
ORF Type ORF3
Protein Length 61
Nucleotide Length 183
Protein Sequence MGTGNHFLLPNQIPSKVPPMPTTIITSPSKPATCPAGPGMGHHTTGYSWESLLTPSLPAVL
Nucleotide Sequence CTGGGGACAGGAAACCACTTCCTTTTGCCAAATCAGATCCCGTCCAAAGTGCCTCCCATGCCTACCACCATCATCACATCCCCCAGCAAGCCAGCCACCTGCCCAGCCGGGCCTGGGATGGGCCACCACACCACTGGATATTCCTGGGAGTCACTGCTGACACCATCTCTCCCAGCAGTCTTG
CircID chr19:45379778|45379984
ORF Type ORF4
Protein Length 59
Nucleotide Length 180
Protein Sequence LGRAGNHWGQETTSFCQIRSRPKCLPCLPPSSHPPASQPPAQPGLGWATTPLDIPGSHC
Nucleotide Sequence CTGGGAAGGGCTGGAAATCACTGGGGACAGGAAACCACTTCCTTTTGCCAAATCAGATCCCGTCCAAAGTGCCTCCCATGCCTACCACCATCATCACATCCCCCAGCAAGCCAGCCACCTGCCCAGCCGGGCCTGGGATGGGCCACCACACCACTGGATATTCCTGGGAGTCACTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab