CircRNA Information

General Information
circRNA Basic Information
CircID chr19:45777463|45777700
Strand +
CircType exon
Host Gene ENSG00000104936.16;
Algorism CIRI2;
Sequence GGCGGAGACCTATGGCAAGATCGTCCACTACAAGGTGAGCACGGCCGCAGGGAGACCTGGCCTCTCCCGGTAGGCGCTCCCAGGCTATCGCCTCCTCTCCCTCTGAGCAGGAGCACCTCTCTCTGCCGCTGGTGGACGAAGGGGTCCCTGAGGAGGCTCGAGACTTCATTCAGCGGTTGCTGTGTCCCCCGGAGACACGGCTGGGCCGGGGTGGAGCAGGCGACTTCCGGACACATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:45777463|45777700 hsa-miR-187-5p 0 0 1
chr19:45777463|45777700 hsa-miR-187-3p 0 0 1
chr19:45777463|45777700 hsa-miR-370-5p 0 0 1
chr19:45777463|45777700 hsa-miR-370-3p 0 0 1
chr19:45777463|45777700 hsa-miR-596 0 0 1
chr19:45777463|45777700 hsa-miR-661 1 0 1
chr19:45777463|45777700 hsa-miR-920 0 0 1
chr19:45777463|45777700 hsa-miR-1178-5p 0 0 1
chr19:45777463|45777700 hsa-miR-1178-3p 0 0 1
chr19:45777463|45777700 hsa-miR-1226-5p 0 0 1
chr19:45777463|45777700 hsa-miR-1226-3p 0 0 1
chr19:45777463|45777700 hsa-miR-1266-5p 0 0 1
chr19:45777463|45777700 hsa-miR-1266-3p 0 0 1
chr19:45777463|45777700 hsa-miR-339-3p 0 1 1
chr19:45777463|45777700 hsa-miR-767-3p 0 0 1
chr19:45777463|45777700 hsa-miR-516a-5p 0 0 1
chr19:45777463|45777700 hsa-miR-142-3p 0 0 1
chr19:45777463|45777700 hsa-miR-637 1 0 0
chr19:45777463|45777700 hsa-miR-638 1 0 0
chr19:45777463|45777700 hsa-miR-762 1 0 0
chr19:45777463|45777700 hsa-miR-3132 1 0 0
chr19:45777463|45777700 hsa-miR-3137 1 0 0
chr19:45777463|45777700 hsa-miR-3154 1 0 0
chr19:45777463|45777700 hsa-miR-3176 1 0 0
chr19:45777463|45777700 hsa-miR-4510 1 1 0
chr19:45777463|45777700 hsa-miR-3960 1 0 0
chr19:45777463|45777700 hsa-miR-4669 0 1 0
chr19:45777463|45777700 hsa-miR-4739 1 0 0
chr19:45777463|45777700 hsa-miR-5193 0 1 0
chr19:45777463|45777700 hsa-miR-6075 0 1 0
chr19:45777463|45777700 hsa-miR-6090 1 0 0
chr19:45777463|45777700 hsa-miR-6127 1 1 0
chr19:45777463|45777700 hsa-miR-6130 0 1 0
chr19:45777463|45777700 hsa-miR-8077 1 1 0
chr19:45777463|45777700 hsa-miR-8085 0 1 0
chr19:45777463|45777700 hsa-miR-9718 1 0 0
chr19:45777463|45777700 hsa-miR-12119 1 0 0
chr19:45777463|45777700 hsa-miR-4726-3p 0 1 0
chr19:45777463|45777700 hsa-miR-7106-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6894-5p 1 0 0
chr19:45777463|45777700 hsa-miR-4695-5p 0 1 0
chr19:45777463|45777700 hsa-miR-6746-5p 0 1 0
chr19:45777463|45777700 hsa-miR-6820-5p 0 1 0
chr19:45777463|45777700 hsa-miR-197-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6805-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6798-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6760-5p 0 1 0
chr19:45777463|45777700 hsa-miR-2467-3p 0 1 0
chr19:45777463|45777700 hsa-miR-6772-3p 0 1 0
chr19:45777463|45777700 hsa-miR-7113-3p 0 1 0
chr19:45777463|45777700 hsa-miR-149-3p 1 0 0
chr19:45777463|45777700 hsa-miR-6824-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6789-5p 1 0 0
chr19:45777463|45777700 hsa-miR-3120-3p 0 1 0
chr19:45777463|45777700 hsa-miR-4707-5p 1 1 0
chr19:45777463|45777700 hsa-miR-4746-3p 1 0 0
chr19:45777463|45777700 hsa-miR-2114-3p 0 1 0
chr19:45777463|45777700 hsa-miR-1199-3p 1 1 0
chr19:45777463|45777700 hsa-miR-3184-3p 0 1 0
chr19:45777463|45777700 hsa-miR-6846-3p 0 1 0
chr19:45777463|45777700 hsa-miR-1207-5p 1 0 0
chr19:45777463|45777700 hsa-miR-4763-3p 1 0 0
chr19:45777463|45777700 hsa-miR-6870-5p 1 0 0
chr19:45777463|45777700 hsa-miR-1343-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6743-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6819-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6851-5p 1 1 0
chr19:45777463|45777700 hsa-miR-7107-5p 1 0 0
chr19:45777463|45777700 hsa-miR-1249-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6797-5p 1 0 0
chr19:45777463|45777700 hsa-miR-7111-5p 1 0 0
chr19:45777463|45777700 hsa-miR-3620-5p 1 0 0
chr19:45777463|45777700 hsa-miR-4728-5p 1 0 0
chr19:45777463|45777700 hsa-miR-1237-5p 1 0 0
chr19:45777463|45777700 hsa-miR-4745-3p 0 1 0
chr19:45777463|45777700 hsa-miR-6794-5p 1 1 0
chr19:45777463|45777700 hsa-miR-6858-5p 1 0 0
chr19:45777463|45777700 hsa-miR-939-5p 1 0 0
chr19:45777463|45777700 hsa-miR-6731-5p 0 1 0
chr19:45777463|45777700 hsa-miR-6856-5p 0 1 0
chr19:45777463|45777700 hsa-miR-4665-5p 0 1 0
chr19:45777463|45777700 hsa-miR-6791-3p 0 1 0
chr19:45777463|45777700 hsa-miR-2682-3p 0 1 0
chr19:45777463|45777700 hsa-miR-6756-3p 0 1 0
chr19:45777463|45777700 hsa-miR-6829-3p 0 1 0
chr19:45777463|45777700 hsa-miR-4756-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:45777463|45777700
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MSRSTSLCRWWTKGSLRRLETSFSGCCVPRRHGWAGVEQATSGHI
Nucleotide Sequence CTGAGCAGGAGCACCTCTCTCTGCCGCTGGTGGACGAAGGGGTCCCTGAGGAGGCTCGAGACTTCATTCAGCGGTTGCTGTGTCCCCCGGAGACACGGCTGGGCCGGGGTGGAGCAGGCGACTTCCGGACACATC
CircID chr19:45777463|45777700
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MASPGRRSQAIASSPSEQEHLSLPLVDEGVPEEARDFIQRLLCPPETRLGRGGAGDFRTH
Nucleotide Sequence CTGGCCTCTCCCGGTAGGCGCTCCCAGGCTATCGCCTCCTCTCCCTCTGAGCAGGAGCACCTCTCTCTGCCGCTGGTGGACGAAGGGGTCCCTGAGGAGGCTCGAGACTTCATTCAGCGGTTGCTGTGTCCCCCGGAGACACGGCTGGGCCGGGGTGGAGCAGGCGACTTCCGGACACAT
CircID chr19:45777463|45777700
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MKSRASSGTPSSTSGRERCSCSEGEEAIAWERLPGEARSPCGRAHLVVDDLAIGLR
Nucleotide Sequence ATGAAGTCTCGAGCCTCCTCAGGGACCCCTTCGTCCACCAGCGGCAGAGAGAGGTGCTCCTGCTCAGAGGGAGAGGAGGCGATAGCCTGGGAGCGCCTACCGGGAGAGGCCAGGTCTCCCTGCGGCCGTGCTCACCTTGTAGTGGACGATCTTGCCATAGGTCTCCGC
CircID chr19:45777463|45777700
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MCPEVACSTPAQPCLRGTQQPLNEVSSLLRDPFVHQRQREVLLLRGRGGDSLGAPTGRGQVSLRPCSPCSGRSCHRSP
Nucleotide Sequence ATGTGTCCGGAAGTCGCCTGCTCCACCCCGGCCCAGCCGTGTCTCCGGGGGACACAGCAACCGCTGAATGAAGTCTCGAGCCTCCTCAGGGACCCCTTCGTCCACCAGCGGCAGAGAGAGGTGCTCCTGCTCAGAGGGAGAGGAGGCGATAGCCTGGGAGCGCCTACCGGGAGAGGCCAGGTCTCCCTGCGGCCGTGCTCACCTTGTAGTGGACGATCTTGCCATAGGTCTCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab