CircRNA Information

General Information
circRNA Basic Information
CircID chr19:46342592|46342761
Strand -
CircType exon
Host Gene ENSG00000124440.14;
Algorism CIRI2;
Sequence AGCTTCCAACTGCCTTTGATTTCAGATCCAAATTCCTCTGATTCTATAATTCAGCCTCCAAATGCTTCTGATTCTGGAATCTAGACTTTTCCCTAAAGATTCCTCTGGTTCTGAATCTTATAACCTCAACTCCCTAATTCCAGACCCCAGCCTCCTAAATCTATTCTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:46342592|46342761 hsa-miR-154-5p 0 0 1
chr19:46342592|46342761 hsa-miR-154-3p 0 0 1
chr19:46342592|46342761 hsa-miR-650 0 0 1
chr19:46342592|46342761 hsa-miR-651-5p 0 0 1
chr19:46342592|46342761 hsa-miR-651-3p 0 0 1
chr19:46342592|46342761 hsa-miR-1299 1 1 1
chr19:46342592|46342761 hsa-miR-1321 0 0 1
chr19:46342592|46342761 hsa-miR-671-5p 0 0 1
chr19:46342592|46342761 hsa-miR-615-5p 0 0 1
chr19:46342592|46342761 hsa-miR-485-5p 0 1 1
chr19:46342592|46342761 hsa-miR-525-5p 0 0 1
chr19:46342592|46342761 hsa-miR-875-3p 0 0 1
chr19:46342592|46342761 hsa-miR-520a-5p 0 0 1
chr19:46342592|46342761 hsa-miR-768-5p 0 0 1
chr19:46342592|46342761 hsa-miR-219-1-3p 0 0 1
chr19:46342592|46342761 hsa-miR-422a 1 0 0
chr19:46342592|46342761 hsa-miR-762 1 0 0
chr19:46342592|46342761 hsa-miR-298 1 0 0
chr19:46342592|46342761 hsa-miR-3125 0 1 0
chr19:46342592|46342761 hsa-miR-3132 1 0 0
chr19:46342592|46342761 hsa-miR-4270 1 0 0
chr19:46342592|46342761 hsa-miR-3916 0 1 0
chr19:46342592|46342761 hsa-miR-3929 0 1 0
chr19:46342592|46342761 hsa-miR-4443 0 1 0
chr19:46342592|46342761 hsa-miR-4505 1 1 0
chr19:46342592|46342761 hsa-miR-4510 1 0 0
chr19:46342592|46342761 hsa-miR-1587 1 0 0
chr19:46342592|46342761 hsa-miR-4739 1 0 0
chr19:46342592|46342761 hsa-miR-5787 1 1 0
chr19:46342592|46342761 hsa-miR-6085 1 0 0
chr19:46342592|46342761 hsa-miR-6127 1 0 0
chr19:46342592|46342761 hsa-miR-6128 0 1 0
chr19:46342592|46342761 hsa-miR-378j 1 0 0
chr19:46342592|46342761 hsa-miR-6129 1 0 0
chr19:46342592|46342761 hsa-miR-8089 1 0 0
chr19:46342592|46342761 hsa-miR-7155-5p 1 1 0
chr19:46342592|46342761 hsa-miR-6747-5p 1 0 0
chr19:46342592|46342761 hsa-miR-3150a-3p 1 0 0
chr19:46342592|46342761 hsa-miR-6857-5p 1 0 0
chr19:46342592|46342761 hsa-miR-5187-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6089 1 0 0
chr19:46342592|46342761 hsa-miR-6807-5p 1 0 0
chr19:46342592|46342761 hsa-miR-3192-5p 1 0 0
chr19:46342592|46342761 hsa-miR-4695-5p 0 1 0
chr19:46342592|46342761 hsa-miR-6783-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6805-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6760-5p 1 0 0
chr19:46342592|46342761 hsa-miR-2467-3p 1 0 0
chr19:46342592|46342761 hsa-miR-193b-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6847-5p 0 1 0
chr19:46342592|46342761 hsa-miR-6824-5p 1 0 0
chr19:46342592|46342761 hsa-miR-3162-5p 1 1 0
chr19:46342592|46342761 hsa-miR-2115-3p 1 1 0
chr19:46342592|46342761 hsa-miR-1233-5p 1 0 0
chr19:46342592|46342761 hsa-miR-4763-3p 1 0 0
chr19:46342592|46342761 hsa-miR-6812-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6726-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6756-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6813-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6819-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6722-3p 1 0 0
chr19:46342592|46342761 hsa-miR-6763-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6779-5p 1 0 0
chr19:46342592|46342761 hsa-miR-3620-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6846-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6848-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6858-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6883-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6889-5p 1 0 0
chr19:46342592|46342761 hsa-miR-939-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6511a-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6855-5p 1 1 0
chr19:46342592|46342761 hsa-miR-4667-5p 1 0 0
chr19:46342592|46342761 hsa-miR-6529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:46342592|46342761
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MLLILESRLFPKDSSGSESYNLNSLIPDPSLLNLFW
Nucleotide Sequence ATGCTTCTGATTCTGGAATCTAGACTTTTCCCTAAAGATTCCTCTGGTTCTGAATCTTATAACCTCAACTCCCTAATTCCAGACCCCAGCCTCCTAAATCTATTCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab