CircRNA Information

General Information
circRNA Basic Information
CircID chr19:4657711|4657888
Strand +
CircType exon
Host Gene ENSG00000074842.6;
Algorism CIRI2;
Sequence CTGGGCTGACGTTGCCTTGTCCGGAGGGGCTTGCAGGGTGGCTGAAGCCCTGGGGCAGAGAACAGAGGGTCCAGGGCCCTCCTGGCTCCCAACAGCTTCTCAGTTCCCACTTCCTGCTGAGCTCTTCTGGACTCAGGATCGCAGATCCGGGGCACAAAGAGGGTGGGGAACATGGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:4657711|4657888 hsa-miR-198 0 1 1
chr19:4657711|4657888 hsa-miR-214-5p 0 0 1
chr19:4657711|4657888 hsa-miR-214-3p 0 0 1
chr19:4657711|4657888 hsa-miR-665 0 1 1
chr19:4657711|4657888 hsa-miR-920 0 0 1
chr19:4657711|4657888 hsa-miR-922 0 0 1
chr19:4657711|4657888 hsa-miR-1200 0 0 1
chr19:4657711|4657888 hsa-miR-1291 0 0 1
chr19:4657711|4657888 hsa-miR-1253 0 0 1
chr19:4657711|4657888 hsa-miR-1292-5p 0 0 1
chr19:4657711|4657888 hsa-miR-1292-3p 0 0 1
chr19:4657711|4657888 hsa-miR-324-3p 0 0 1
chr19:4657711|4657888 hsa-miR-1300 0 0 1
chr19:4657711|4657888 hsa-miR-2113 0 1 0
chr19:4657711|4657888 hsa-miR-761 0 1 0
chr19:4657711|4657888 hsa-miR-2117 0 1 0
chr19:4657711|4657888 hsa-miR-3147 1 0 0
chr19:4657711|4657888 hsa-miR-4308 0 1 0
chr19:4657711|4657888 hsa-miR-4273 0 1 0
chr19:4657711|4657888 hsa-miR-4291 0 1 0
chr19:4657711|4657888 hsa-miR-4425 0 1 0
chr19:4657711|4657888 hsa-miR-4442 0 1 0
chr19:4657711|4657888 hsa-miR-4471 0 1 0
chr19:4657711|4657888 hsa-miR-6165 0 1 0
chr19:4657711|4657888 hsa-miR-8059 0 1 0
chr19:4657711|4657888 hsa-miR-6854-5p 0 1 0
chr19:4657711|4657888 hsa-miR-505-5p 0 1 0
chr19:4657711|4657888 hsa-miR-3189-5p 1 0 0
chr19:4657711|4657888 hsa-miR-6827-5p 1 1 0
chr19:4657711|4657888 hsa-miR-4691-3p 0 1 0
chr19:4657711|4657888 hsa-miR-6780a-3p 0 1 0
chr19:4657711|4657888 hsa-miR-1266-3p 0 1 0
chr19:4657711|4657888 hsa-miR-3690 0 1 0
chr19:4657711|4657888 hsa-miR-7160-3p 0 1 0
chr19:4657711|4657888 hsa-miR-887-5p 0 1 0
chr19:4657711|4657888 hsa-miR-5000-5p 0 1 0
chr19:4657711|4657888 hsa-miR-3158-3p 0 1 0
chr19:4657711|4657888 hsa-miR-2276-5p 0 1 0
chr19:4657711|4657888 hsa-miR-3605-3p 0 1 0
chr19:4657711|4657888 hsa-miR-1296-5p 0 1 0
chr19:4657711|4657888 hsa-miR-6865-3p 0 1 0
chr19:4657711|4657888 hsa-miR-6777-3p 0 1 0
chr19:4657711|4657888 hsa-miR-3620-3p 0 1 0
chr19:4657711|4657888 hsa-miR-4716-5p 0 1 0
chr19:4657711|4657888 hsa-miR-328-5p 1 0 0
chr19:4657711|4657888 hsa-miR-4685-5p 0 1 0
chr19:4657711|4657888 hsa-miR-4726-5p 1 1 0
chr19:4657711|4657888 hsa-miR-939-5p 1 1 0
chr19:4657711|4657888 hsa-miR-4758-5p 1 0 0
chr19:4657711|4657888 hsa-miR-10396a-3p 0 1 0
chr19:4657711|4657888 hsa-miR-10396b-3p 0 1 0
chr19:4657711|4657888 hsa-miR-6775-3p 1 1 0
chr19:4657711|4657888 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:4657711|4657888
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MSGGACRVAEALGQRTEGPGPSWLPTASQFPLPAELFWTQDRRSGAQRGWGTWG
Nucleotide Sequence TTGTCCGGAGGGGCTTGCAGGGTGGCTGAAGCCCTGGGGCAGAGAACAGAGGGTCCAGGGCCCTCCTGGCTCCCAACAGCTTCTCAGTTCCCACTTCCTGCTGAGCTCTTCTGGACTCAGGATCGCAGATCCGGGGCACAAAGAGGGTGGGGAACATGGGGG
CircID chr19:4657711|4657888
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MTLPCPEGLAGWLKPWGREQRVQGPPGSQQLLSSHFLLSSSGLRIADPGHKEGGEHG
Nucleotide Sequence CTGACGTTGCCTTGTCCGGAGGGGCTTGCAGGGTGGCTGAAGCCCTGGGGCAGAGAACAGAGGGTCCAGGGCCCTCCTGGCTCCCAACAGCTTCTCAGTTCCCACTTCCTGCTGAGCTCTTCTGGACTCAGGATCGCAGATCCGGGGCACAAAGAGGGTGGGGAACATGGG
CircID chr19:4657711|4657888
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MCPGSAILSPEELSRKWELRSCWEPGGPWTLCSLPQGFSHPASPSGQGNVSP
Nucleotide Sequence TTGTGCCCCGGATCTGCGATCCTGAGTCCAGAAGAGCTCAGCAGGAAGTGGGAACTGAGAAGCTGTTGGGAGCCAGGAGGGCCCTGGACCCTCTGTTCTCTGCCCCAGGGCTTCAGCCACCCTGCAAGCCCCTCCGGACAAGGCAACGTCAGCCCA
CircID chr19:4657711|4657888
ORF Type ORF4
Protein Length 57
Nucleotide Length 171
Protein Sequence MFPTLFVPRICDPESRRAQQEVGTEKLLGARRALDPLFSAPGLQPPCKPLRTRQRQP
Nucleotide Sequence ATGTTCCCCACCCTCTTTGTGCCCCGGATCTGCGATCCTGAGTCCAGAAGAGCTCAGCAGGAAGTGGGAACTGAGAAGCTGTTGGGAGCCAGGAGGGCCCTGGACCCTCTGTTCTCTGCCCCAGGGCTTCAGCCACCCTGCAAGCCCCTCCGGACAAGGCAACGTCAGCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab