CircRNA Information

General Information
circRNA Basic Information
CircID chr19:46608553|46608923
Strand +
CircType exon
Host Gene ENSG00000160014.15;
Algorism CIRI2;
Sequence CTCCTCATCGGTCAGCTTCTCCCCCAGGTTCGTCATTACGTGACGCAGCTCTGCGGCGCTGATGTAGCCATTCCCATCCTGGGGGTTGGGGATAAAGCCTTTCACTGGGCACTTCTCCCGGTGGGGAGAGAGGCAGTGAGAGGGGTGGCTGTCATCACCATCCCTCAGCAGTGAGCACAGTGAGGGAGGCTGCCTGAGGTGGCAGAGCAGGTTGGCAATGAGGCTGGCACCGGGACCCGGACCTCCTGGAAGTGGTAGCTCCGTGGCTCCAGTTCCGCCTGTCTGCCTGAAGGCTGGCGTCAGTCTCAGAGCCGCCCCTGGAGAGGGCTGCTTACCTTGTCAAAGACACGGAACGCCTCTCGGATCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:46608553|46608923 hsa-miR-187-5p 0 0 1
chr19:46608553|46608923 hsa-miR-187-3p 0 0 1
chr19:46608553|46608923 hsa-miR-221-5p 0 0 1
chr19:46608553|46608923 hsa-miR-221-3p 0 0 1
chr19:46608553|46608923 hsa-miR-222-5p 0 0 1
chr19:46608553|46608923 hsa-miR-222-3p 0 0 1
chr19:46608553|46608923 hsa-miR-488-5p 0 0 1
chr19:46608553|46608923 hsa-miR-488-3p 0 0 1
chr19:46608553|46608923 hsa-miR-511-5p 0 0 1
chr19:46608553|46608923 hsa-miR-511-3p 0 0 1
chr19:46608553|46608923 hsa-miR-558 0 0 1
chr19:46608553|46608923 hsa-miR-624-5p 0 0 1
chr19:46608553|46608923 hsa-miR-624-3p 0 0 1
chr19:46608553|46608923 hsa-miR-625-5p 0 0 1
chr19:46608553|46608923 hsa-miR-625-3p 0 0 1
chr19:46608553|46608923 hsa-miR-637 0 0 1
chr19:46608553|46608923 hsa-miR-766-5p 0 0 1
chr19:46608553|46608923 hsa-miR-766-3p 0 0 1
chr19:46608553|46608923 hsa-miR-765 0 0 1
chr19:46608553|46608923 hsa-miR-665 0 1 1
chr19:46608553|46608923 hsa-miR-760 0 1 1
chr19:46608553|46608923 hsa-miR-1178-5p 0 0 1
chr19:46608553|46608923 hsa-miR-1178-3p 0 0 1
chr19:46608553|46608923 hsa-miR-1202 0 1 1
chr19:46608553|46608923 hsa-miR-1208 0 0 1
chr19:46608553|46608923 hsa-miR-1275 1 1 1
chr19:46608553|46608923 hsa-miR-1324 0 0 1
chr19:46608553|46608923 hsa-miR-490-3p 0 1 1
chr19:46608553|46608923 hsa-miR-361-3p 0 1 1
chr19:46608553|46608923 hsa-miR-1280 0 0 1
chr19:46608553|46608923 hsa-miR-514 0 0 1
chr19:46608553|46608923 hsa-miR-499-3p 0 0 1
chr19:46608553|46608923 hsa-miR-492 0 1 0
chr19:46608553|46608923 hsa-miR-608 1 1 0
chr19:46608553|46608923 hsa-miR-1272 0 1 0
chr19:46608553|46608923 hsa-miR-3175 0 1 0
chr19:46608553|46608923 hsa-miR-3183 0 1 0
chr19:46608553|46608923 hsa-miR-4271 1 0 0
chr19:46608553|46608923 hsa-miR-3937 0 1 0
chr19:46608553|46608923 hsa-miR-4449 1 1 0
chr19:46608553|46608923 hsa-miR-548ai 0 1 0
chr19:46608553|46608923 hsa-miR-4469 0 1 0
chr19:46608553|46608923 hsa-miR-2392 0 1 0
chr19:46608553|46608923 hsa-miR-4515 0 1 0
chr19:46608553|46608923 hsa-miR-4516 0 1 0
chr19:46608553|46608923 hsa-miR-4525 1 0 0
chr19:46608553|46608923 hsa-miR-3972 1 1 0
chr19:46608553|46608923 hsa-miR-4673 0 1 0
chr19:46608553|46608923 hsa-miR-4683 0 1 0
chr19:46608553|46608923 hsa-miR-4692 0 1 0
chr19:46608553|46608923 hsa-miR-4739 1 0 0
chr19:46608553|46608923 hsa-miR-4784 0 1 0
chr19:46608553|46608923 hsa-miR-5690 0 1 0
chr19:46608553|46608923 hsa-miR-5698 1 0 0
chr19:46608553|46608923 hsa-miR-8085 1 0 0
chr19:46608553|46608923 hsa-miR-12115 1 0 0
chr19:46608553|46608923 hsa-miR-12118 0 1 0
chr19:46608553|46608923 hsa-miR-3194-3p 1 1 0
chr19:46608553|46608923 hsa-miR-323a-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6747-3p 0 1 0
chr19:46608553|46608923 hsa-miR-7106-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6892-3p 0 1 0
chr19:46608553|46608923 hsa-miR-139-3p 1 0 0
chr19:46608553|46608923 hsa-miR-7851-3p 0 1 0
chr19:46608553|46608923 hsa-miR-4768-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6757-5p 0 1 0
chr19:46608553|46608923 hsa-miR-7847-3p 1 0 0
chr19:46608553|46608923 hsa-miR-6746-5p 0 1 0
chr19:46608553|46608923 hsa-miR-505-5p 0 1 0
chr19:46608553|46608923 hsa-miR-6873-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6849-3p 1 1 0
chr19:46608553|46608923 hsa-miR-7110-3p 0 1 0
chr19:46608553|46608923 hsa-miR-3180-3p 1 0 0
chr19:46608553|46608923 hsa-miR-6805-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6798-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6760-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6782-5p 1 0 0
chr19:46608553|46608923 hsa-miR-3194-5p 0 1 0
chr19:46608553|46608923 hsa-miR-3150b-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6882-3p 1 1 0
chr19:46608553|46608923 hsa-miR-6858-3p 1 0 0
chr19:46608553|46608923 hsa-miR-615-5p 1 0 0
chr19:46608553|46608923 hsa-miR-7109-5p 1 0 0
chr19:46608553|46608923 hsa-miR-223-5p 0 1 0
chr19:46608553|46608923 hsa-miR-4715-3p 0 1 0
chr19:46608553|46608923 hsa-miR-485-5p 0 1 0
chr19:46608553|46608923 hsa-miR-6834-5p 0 1 0
chr19:46608553|46608923 hsa-miR-7111-3p 0 1 0
chr19:46608553|46608923 hsa-miR-1304-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6789-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6878-5p 0 1 0
chr19:46608553|46608923 hsa-miR-5010-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6743-3p 0 1 0
chr19:46608553|46608923 hsa-miR-873-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6793-3p 1 1 0
chr19:46608553|46608923 hsa-miR-6778-3p 0 1 0
chr19:46608553|46608923 hsa-miR-3614-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6837-3p 0 1 0
chr19:46608553|46608923 hsa-miR-4632-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6802-3p 0 1 0
chr19:46608553|46608923 hsa-miR-181d-3p 0 1 0
chr19:46608553|46608923 hsa-miR-4727-5p 0 1 0
chr19:46608553|46608923 hsa-miR-642a-5p 0 1 0
chr19:46608553|46608923 hsa-miR-6890-3p 0 1 0
chr19:46608553|46608923 hsa-miR-5002-3p 0 1 0
chr19:46608553|46608923 hsa-miR-4740-3p 1 0 0
chr19:46608553|46608923 hsa-miR-6870-5p 1 0 0
chr19:46608553|46608923 hsa-miR-1343-5p 1 0 0
chr19:46608553|46608923 hsa-miR-3180 1 0 0
chr19:46608553|46608923 hsa-miR-6756-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6803-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6819-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6751-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6788-5p 0 1 0
chr19:46608553|46608923 hsa-miR-6797-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6808-5p 0 1 0
chr19:46608553|46608923 hsa-miR-7111-5p 1 1 0
chr19:46608553|46608923 hsa-miR-4728-5p 1 0 0
chr19:46608553|46608923 hsa-miR-328-5p 1 0 0
chr19:46608553|46608923 hsa-miR-4725-3p 1 0 0
chr19:46608553|46608923 hsa-miR-6795-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6887-5p 1 0 0
chr19:46608553|46608923 hsa-miR-4723-5p 1 0 0
chr19:46608553|46608923 hsa-miR-939-5p 1 0 0
chr19:46608553|46608923 hsa-miR-1910-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6511a-5p 0 1 0
chr19:46608553|46608923 hsa-miR-3085-5p 0 1 0
chr19:46608553|46608923 hsa-miR-4665-5p 0 1 0
chr19:46608553|46608923 hsa-miR-6766-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6791-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6762-5p 1 1 0
chr19:46608553|46608923 hsa-miR-6805-3p 1 1 0
chr19:46608553|46608923 hsa-miR-4723-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6769b-3p 0 1 0
chr19:46608553|46608923 hsa-miR-6819-3p 0 1 0
chr19:46608553|46608923 hsa-miR-4691-5p 1 0 0
chr19:46608553|46608923 hsa-miR-6500-5p 1 1 0
chr19:46608553|46608923 hsa-miR-1912-5p 0 1 0
chr19:46608553|46608923 hsa-miR-6864-3p 0 1 0
chr19:46608553|46608923 hsa-miR-7157-3p 0 1 0
chr19:46608553|46608923 hsa-miR-570-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:46608553|46608923
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MGVGDKAFHWALLPVGREAVRGVAVITIPQQ
Nucleotide Sequence CTGGGGGTTGGGGATAAAGCCTTTCACTGGGCACTTCTCCCGGTGGGGAGAGAGGCAGTGAGAGGGGTGGCTGTCATCACCATCCCTCAGCAGTGA
CircID chr19:46608553|46608923
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MPEGWRQSQSRPWRGLLTLSKTRNASRIS
Nucleotide Sequence CTGCCTGAAGGCTGGCGTCAGTCTCAGAGCCGCCCCTGGAGAGGGCTGCTTACCTTGTCAAAGACACGGAACGCCTCTCGGATCTCC
CircID chr19:46608553|46608923
ORF Type ORF3
Protein Length 74
Nucleotide Length 222
Protein Sequence MSSPSLSSEHSEGGCLRWQSRLAMRLAPGPGPPGSGSSVAPVPPVCLKAGVSLRAAPGEGCLPCQRHGTPLGSP
Nucleotide Sequence CTGTCATCACCATCCCTCAGCAGTGAGCACAGTGAGGGAGGCTGCCTGAGGTGGCAGAGCAGGTTGGCAATGAGGCTGGCACCGGGACCCGGACCTCCTGGAAGTGGTAGCTCCGTGGCTCCAGTTCCGCCTGTCTGCCTGAAGGCTGGCGTCAGTCTCAGAGCCGCCCCTGGAGAGGGCTGCTTACCTTGTCAAAGACACGGAACGCCTCTCGGATCTCCT
CircID chr19:46608553|46608923
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MGTSPGGERGSERGGCHHHPSAVSTVREAA
Nucleotide Sequence CTGGGCACTTCTCCCGGTGGGGAGAGAGGCAGTGAGAGGGGTGGCTGTCATCACCATCCCTCAGCAGTGAGCACAGTGAGGGAGGCTGCCTGA
CircID chr19:46608553|46608923
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MASVSEPPLERAAYLVKDTERLSDLL
Nucleotide Sequence CTGGCGTCAGTCTCAGAGCCGCCCCTGGAGAGGGCTGCTTACCTTGTCAAAGACACGGAACGCCTCTCGGATCTCCTC
CircID chr19:46608553|46608923
ORF Type ORF6
Protein Length 35
Nucleotide Length 108
Protein Sequence MEPRSYHFQEVRVPVPASLPTCSATSGSLPHCAHC
Nucleotide Sequence CTGGAGCCACGGAGCTACCACTTCCAGGAGGTCCGGGTCCCGGTGCCAGCCTCATTGCCAACCTGCTCTGCCACCTCAGGCAGCCTCCCTCACTGTGCTCACTGCTGA
CircID chr19:46608553|46608923
ORF Type ORF7
Protein Length 43
Nucleotide Length 132
Protein Sequence MPLSPPGEVPSERLYPQPPGWEWLHQRRRAASRNDEPGGEADR
Nucleotide Sequence CTGCCTCTCTCCCCACCGGGAGAAGTGCCCAGTGAAAGGCTTTATCCCCAACCCCCAGGATGGGAATGGCTACATCAGCGCCGCAGAGCTGCGTCACGTAATGACGAACCTGGGGGAGAAGCTGACCGATGA
CircID chr19:46608553|46608923
ORF Type ORF8
Protein Length 103
Nucleotide Length 309
Protein Sequence MRLTPAFRQTGGTGATELPLPGGPGPGASLIANLLCHLRQPPSLCSLLRDGDDSHPSHCLSPHREKCPVKGFIPNPQDGNGYISAAELRHVMTNLGEKLTDEE
Nucleotide Sequence CTGAGACTGACGCCAGCCTTCAGGCAGACAGGCGGAACTGGAGCCACGGAGCTACCACTTCCAGGAGGTCCGGGTCCCGGTGCCAGCCTCATTGCCAACCTGCTCTGCCACCTCAGGCAGCCTCCCTCACTGTGCTCACTGCTGAGGGATGGTGATGACAGCCACCCCTCTCACTGCCTCTCTCCCCACCGGGAGAAGTGCCCAGTGAAAGGCTTTATCCCCAACCCCCAGGATGGGAATGGCTACATCAGCGCCGCAGAGCTGCGTCACGTAATGACGAACCTGGGGGAGAAGCTGACCGATGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab