CircRNA Information

General Information
circRNA Basic Information
CircID chr19:46608921|46609243
Strand +
CircType exon
Host Gene ENSG00000160014.15;
Algorism CIRI2;
Sequence CGGGGTACGCAGGGGAGTGTTGAAGAGAGAGTGCGCGCGCGAGAAGAGAGAGATCAAGAGAACGGGCATCGCCAGCTGCCCGGGGGGCCTTCACTTTGCAGTCATCATCTGTACAAACTCTGTGGAGTGAAGCAGAGAGAGAGGAGGTCAGGCGGGCAGGCTAAGTGGCGAGCGGCCCTCCCCAACAAGAGGGATCTGGGGGCTTGTTCCTGAAGCTGCGATTCTCTTCTTGTTCCAGAGATCAAGCCTGGCCTTGACTCACCTTCATAATTGACCTGGCCATCTCCATCGATGTCAGCCTCCCTGATCATCTCATCCACCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:46608921|46609243 hsa-miR-143-5p 0 0 1
chr19:46608921|46609243 hsa-miR-143-3p 0 0 1
chr19:46608921|46609243 hsa-miR-383-5p 0 0 1
chr19:46608921|46609243 hsa-miR-383-3p 0 0 1
chr19:46608921|46609243 hsa-miR-326 0 0 1
chr19:46608921|46609243 hsa-miR-489-5p 0 0 1
chr19:46608921|46609243 hsa-miR-489-3p 0 0 1
chr19:46608921|46609243 hsa-miR-493-5p 0 0 1
chr19:46608921|46609243 hsa-miR-493-3p 0 0 1
chr19:46608921|46609243 hsa-miR-520g-5p 0 0 1
chr19:46608921|46609243 hsa-miR-520g-3p 0 0 1
chr19:46608921|46609243 hsa-miR-520h 0 0 1
chr19:46608921|46609243 hsa-miR-527 0 1 1
chr19:46608921|46609243 hsa-miR-596 1 1 1
chr19:46608921|46609243 hsa-miR-620 0 0 1
chr19:46608921|46609243 hsa-miR-421 0 0 1
chr19:46608921|46609243 hsa-miR-873-5p 0 0 1
chr19:46608921|46609243 hsa-miR-873-3p 0 0 1
chr19:46608921|46609243 hsa-miR-939-5p 0 0 1
chr19:46608921|46609243 hsa-miR-939-3p 0 0 1
chr19:46608921|46609243 hsa-miR-942-5p 0 0 1
chr19:46608921|46609243 hsa-miR-942-3p 0 0 1
chr19:46608921|46609243 hsa-miR-1236-5p 0 0 1
chr19:46608921|46609243 hsa-miR-1236-3p 0 0 1
chr19:46608921|46609243 hsa-miR-1299 0 0 1
chr19:46608921|46609243 hsa-miR-1255a 0 0 1
chr19:46608921|46609243 hsa-miR-1270 0 0 1
chr19:46608921|46609243 hsa-miR-1272 0 1 1
chr19:46608921|46609243 hsa-miR-1321 0 0 1
chr19:46608921|46609243 hsa-miR-485-5p 0 1 1
chr19:46608921|46609243 hsa-miR-361-3p 0 0 1
chr19:46608921|46609243 hsa-miR-1207-3p 0 0 1
chr19:46608921|46609243 hsa-miR-331-3p 0 0 1
chr19:46608921|46609243 hsa-miR-875-3p 0 0 1
chr19:46608921|46609243 hsa-miR-483-3p 0 0 1
chr19:46608921|46609243 hsa-miR-330-5p 0 0 1
chr19:46608921|46609243 hsa-miR-518a-5p 0 1 1
chr19:46608921|46609243 hsa-miR-642 0 0 1
chr19:46608921|46609243 hsa-miR-1255b 0 0 1
chr19:46608921|46609243 hsa-miR-346 1 1 0
chr19:46608921|46609243 hsa-miR-638 1 0 0
chr19:46608921|46609243 hsa-miR-3165 0 1 0
chr19:46608921|46609243 hsa-miR-3183 0 1 0
chr19:46608921|46609243 hsa-miR-4298 1 1 0
chr19:46608921|46609243 hsa-miR-3911 1 0 0
chr19:46608921|46609243 hsa-miR-3929 0 1 0
chr19:46608921|46609243 hsa-miR-3943 1 1 0
chr19:46608921|46609243 hsa-miR-4469 1 0 0
chr19:46608921|46609243 hsa-miR-4651 0 1 0
chr19:46608921|46609243 hsa-miR-4739 1 1 0
chr19:46608921|46609243 hsa-miR-4767 1 0 0
chr19:46608921|46609243 hsa-miR-5193 0 1 0
chr19:46608921|46609243 hsa-miR-6088 1 1 0
chr19:46608921|46609243 hsa-miR-6126 0 1 0
chr19:46608921|46609243 hsa-miR-6133 1 0 0
chr19:46608921|46609243 hsa-miR-6134 0 1 0
chr19:46608921|46609243 hsa-miR-6745 1 0 0
chr19:46608921|46609243 hsa-miR-8082 0 1 0
chr19:46608921|46609243 hsa-miR-12114 1 1 0
chr19:46608921|46609243 hsa-miR-12128 1 1 0
chr19:46608921|46609243 hsa-miR-4726-3p 1 0 0
chr19:46608921|46609243 hsa-miR-6825-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6894-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6857-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6799-5p 1 0 0
chr19:46608921|46609243 hsa-miR-3192-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6757-5p 1 0 0
chr19:46608921|46609243 hsa-miR-4755-3p 0 1 0
chr19:46608921|46609243 hsa-miR-6840-5p 0 1 0
chr19:46608921|46609243 hsa-miR-6762-3p 0 1 0
chr19:46608921|46609243 hsa-miR-4655-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6873-3p 1 1 0
chr19:46608921|46609243 hsa-miR-7110-3p 1 1 0
chr19:46608921|46609243 hsa-miR-6817-3p 0 1 0
chr19:46608921|46609243 hsa-miR-6845-3p 1 0 0
chr19:46608921|46609243 hsa-miR-4753-3p 1 0 0
chr19:46608921|46609243 hsa-miR-6728-3p 0 1 0
chr19:46608921|46609243 hsa-miR-6888-5p 0 1 0
chr19:46608921|46609243 hsa-miR-6788-3p 1 1 0
chr19:46608921|46609243 hsa-miR-4763-5p 1 1 0
chr19:46608921|46609243 hsa-miR-185-5p 0 1 0
chr19:46608921|46609243 hsa-miR-6894-3p 1 1 0
chr19:46608921|46609243 hsa-miR-4640-5p 1 0 0
chr19:46608921|46609243 hsa-miR-3691-5p 1 1 0
chr19:46608921|46609243 hsa-miR-6771-5p 1 0 0
chr19:46608921|46609243 hsa-miR-4783-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6878-3p 0 1 0
chr19:46608921|46609243 hsa-miR-6809-3p 1 1 0
chr19:46608921|46609243 hsa-miR-7111-3p 1 0 0
chr19:46608921|46609243 hsa-miR-6830-3p 1 1 0
chr19:46608921|46609243 hsa-miR-149-3p 0 1 0
chr19:46608921|46609243 hsa-miR-937-5p 1 1 0
chr19:46608921|46609243 hsa-miR-6824-5p 1 0 0
chr19:46608921|46609243 hsa-miR-3162-5p 1 0 0
chr19:46608921|46609243 hsa-miR-3158-5p 0 1 0
chr19:46608921|46609243 hsa-miR-7112-5p 0 1 0
chr19:46608921|46609243 hsa-miR-3678-3p 0 1 0
chr19:46608921|46609243 hsa-miR-3922-5p 0 1 0
chr19:46608921|46609243 hsa-miR-6743-3p 0 1 0
chr19:46608921|46609243 hsa-miR-597-3p 1 0 0
chr19:46608921|46609243 hsa-miR-2277-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6880-3p 1 0 0
chr19:46608921|46609243 hsa-miR-130b-5p 0 1 0
chr19:46608921|46609243 hsa-miR-6515-3p 0 1 0
chr19:46608921|46609243 hsa-miR-6812-3p 1 0 0
chr19:46608921|46609243 hsa-miR-676-5p 1 0 0
chr19:46608921|46609243 hsa-miR-5587-3p 0 1 0
chr19:46608921|46609243 hsa-miR-1207-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6769b-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6865-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6870-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6754-5p 1 1 0
chr19:46608921|46609243 hsa-miR-6769a-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6851-5p 1 0 0
chr19:46608921|46609243 hsa-miR-11181-3p 1 0 0
chr19:46608921|46609243 hsa-miR-6763-5p 0 1 0
chr19:46608921|46609243 hsa-miR-7111-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6780b-5p 1 0 0
chr19:46608921|46609243 hsa-miR-328-5p 1 0 0
chr19:46608921|46609243 hsa-miR-4725-3p 1 0 0
chr19:46608921|46609243 hsa-miR-6777-5p 1 1 0
chr19:46608921|46609243 hsa-miR-6848-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6889-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6736-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6785-5p 1 0 0
chr19:46608921|46609243 hsa-miR-6810-3p 0 1 0
chr19:46608921|46609243 hsa-miR-4723-3p 0 1 0
chr19:46608921|46609243 hsa-miR-4756-5p 0 1 0
chr19:46608921|46609243 hsa-miR-6884-5p 0 1 0
chr19:46608921|46609243 hsa-miR-6833-3p 0 1 0
chr19:46608921|46609243 hsa-miR-6843-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:46608921|46609243
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MPGGPSLCSHHLYKLCGVKQRERRSGGQAKWRAALPNKRDLGACS
Nucleotide Sequence CTGCCCGGGGGGCCTTCACTTTGCAGTCATCATCTGTACAAACTCTGTGGAGTGAAGCAGAGAGAGAGGAGGTCAGGCGGGCAGGCTAAGTGGCGAGCGGCCCTCCCCAACAAGAGGGATCTGGGGGCTTGTTCCTGA
CircID chr19:46608921|46609243
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MKRECAREKREIKRTGIASCPGGLHFAVIICTNSVE
Nucleotide Sequence TTGAAGAGAGAGTGCGCGCGCGAGAAGAGAGAGATCAAGAGAACGGGCATCGCCAGCTGCCCGGGGGGCCTTCACTTTGCAGTCATCATCTGTACAAACTCTGTGGAGTGA
CircID chr19:46608921|46609243
ORF Type ORF3
Protein Length 68
Nucleotide Length 207
Protein Sequence MIREADIDGDGQVNYEGESRPGLISGTRRESQLQEQAPRSLLLGRAARHLACPPDLLSLCFTPQSLYR
Nucleotide Sequence ATGATCAGGGAGGCTGACATCGATGGAGATGGCCAGGTCAATTATGAAGGTGAGTCAAGGCCAGGCTTGATCTCTGGAACAAGAAGAGAATCGCAGCTTCAGGAACAAGCCCCCAGATCCCTCTTGTTGGGGAGGGCCGCTCGCCACTTAGCCTGCCCGCCTGACCTCCTCTCTCTCTGCTTCACTCCACAGAGTTTGTACAGATGA
CircID chr19:46608921|46609243
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MEQEENRSFRNKPPDPSCWGGPLAT
Nucleotide Sequence CTGGAACAAGAAGAGAATCGCAGCTTCAGGAACAAGCCCCCAGATCCCTCTTGTTGGGGAGGGCCGCTCGCCACTTAG
CircID chr19:46608921|46609243
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MTSSLSASLHRVCTDDDCKVKAPRAAGDARSLDLSLLARALSLQHSPAYP
Nucleotide Sequence CTGACCTCCTCTCTCTCTGCTTCACTCCACAGAGTTTGTACAGATGATGACTGCAAAGTGAAGGCCCCCCGGGCAGCTGGCGATGCCCGTTCTCTTGATCTCTCTCTTCTCGCGCGCGCACTCTCTCTTCAACACTCCCCTGCGTACCCC
CircID chr19:46608921|46609243
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MAMPVLLISLFSRAHSLFNTPLRTP
Nucleotide Sequence CTGGCGATGCCCGTTCTCTTGATCTCTCTCTTCTCGCGCGCGCACTCTCTCTTCAACACTCCCCTGCGTACCCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab