CircRNA Information

General Information
circRNA Basic Information
CircID chr19:46608961|46609235
Strand +
CircType exon
Host Gene ENSG00000160014.15;
Algorism CIRI2;
Sequence GCAGGGGAGTGTTGAAGAGAGAGTGCGCGCGCGAGAAGAGAGAGATCAAGAGAACGGGCATCGCCAGCTGCCCGGGGGGCCTTCACTTTGCAGTCATCATCTGTACAAACTCTGTGGAGTGAAGCAGAGAGAGAGGAGGTCAGGCGGGCAGGCTAAGTGGCGAGCGGCCCTCCCCAACAAGAGGGATCTGGGGGCTTGTTCCTGAAGCTGCGATTCTCTTCTTGTTCCAGAGATCAAGCCTGGCCTTGACTCACCTTCATAATTGACCTGGCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:46608961|46609235 hsa-miR-326 0 0 1
chr19:46608961|46609235 hsa-miR-493-5p 0 0 1
chr19:46608961|46609235 hsa-miR-493-3p 0 0 1
chr19:46608961|46609235 hsa-miR-520g-5p 0 0 1
chr19:46608961|46609235 hsa-miR-520g-3p 0 0 1
chr19:46608961|46609235 hsa-miR-520h 0 0 1
chr19:46608961|46609235 hsa-miR-527 0 1 1
chr19:46608961|46609235 hsa-miR-596 1 1 1
chr19:46608961|46609235 hsa-miR-421 0 0 1
chr19:46608961|46609235 hsa-miR-873-5p 0 0 1
chr19:46608961|46609235 hsa-miR-873-3p 0 0 1
chr19:46608961|46609235 hsa-miR-939-5p 0 0 1
chr19:46608961|46609235 hsa-miR-939-3p 0 0 1
chr19:46608961|46609235 hsa-miR-942-5p 0 0 1
chr19:46608961|46609235 hsa-miR-942-3p 0 0 1
chr19:46608961|46609235 hsa-miR-1236-5p 0 0 1
chr19:46608961|46609235 hsa-miR-1236-3p 0 0 1
chr19:46608961|46609235 hsa-miR-1299 0 0 1
chr19:46608961|46609235 hsa-miR-1272 0 1 1
chr19:46608961|46609235 hsa-miR-361-3p 0 0 1
chr19:46608961|46609235 hsa-miR-1207-3p 0 0 1
chr19:46608961|46609235 hsa-miR-331-3p 0 0 1
chr19:46608961|46609235 hsa-miR-875-3p 0 0 1
chr19:46608961|46609235 hsa-miR-483-3p 0 0 1
chr19:46608961|46609235 hsa-miR-330-5p 0 0 1
chr19:46608961|46609235 hsa-miR-518a-5p 0 1 1
chr19:46608961|46609235 hsa-miR-642 0 0 1
chr19:46608961|46609235 hsa-miR-346 1 1 0
chr19:46608961|46609235 hsa-miR-3183 0 1 0
chr19:46608961|46609235 hsa-miR-4298 1 1 0
chr19:46608961|46609235 hsa-miR-4259 1 0 0
chr19:46608961|46609235 hsa-miR-3943 1 1 0
chr19:46608961|46609235 hsa-miR-4469 1 0 0
chr19:46608961|46609235 hsa-miR-4767 1 0 0
chr19:46608961|46609235 hsa-miR-5193 0 1 0
chr19:46608961|46609235 hsa-miR-6126 0 1 0
chr19:46608961|46609235 hsa-miR-4726-3p 1 0 0
chr19:46608961|46609235 hsa-miR-6799-5p 1 0 0
chr19:46608961|46609235 hsa-miR-4755-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6840-5p 0 1 0
chr19:46608961|46609235 hsa-miR-6762-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6873-3p 0 1 0
chr19:46608961|46609235 hsa-miR-7110-3p 1 1 0
chr19:46608961|46609235 hsa-miR-6817-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6728-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6788-3p 0 1 0
chr19:46608961|46609235 hsa-miR-4763-5p 1 1 0
chr19:46608961|46609235 hsa-miR-185-5p 0 1 0
chr19:46608961|46609235 hsa-miR-6894-3p 1 1 0
chr19:46608961|46609235 hsa-miR-4640-5p 1 0 0
chr19:46608961|46609235 hsa-miR-4783-5p 1 0 0
chr19:46608961|46609235 hsa-miR-6878-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6809-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6830-3p 1 1 0
chr19:46608961|46609235 hsa-miR-149-3p 0 1 0
chr19:46608961|46609235 hsa-miR-937-5p 1 1 0
chr19:46608961|46609235 hsa-miR-3158-5p 0 1 0
chr19:46608961|46609235 hsa-miR-7112-5p 0 1 0
chr19:46608961|46609235 hsa-miR-3678-3p 0 1 0
chr19:46608961|46609235 hsa-miR-3922-5p 0 1 0
chr19:46608961|46609235 hsa-miR-6743-3p 0 1 0
chr19:46608961|46609235 hsa-miR-2277-5p 1 0 0
chr19:46608961|46609235 hsa-miR-6880-3p 1 0 0
chr19:46608961|46609235 hsa-miR-130b-5p 0 1 0
chr19:46608961|46609235 hsa-miR-6515-3p 0 1 0
chr19:46608961|46609235 hsa-miR-5587-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6851-5p 1 0 0
chr19:46608961|46609235 hsa-miR-6763-5p 0 1 0
chr19:46608961|46609235 hsa-miR-4723-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6833-3p 0 1 0
chr19:46608961|46609235 hsa-miR-6843-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:46608961|46609235
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MPGGPSLCSHHLYKLCGVKQRERRSGGQAKWRAALPNKRDLGACS
Nucleotide Sequence CTGCCCGGGGGGCCTTCACTTTGCAGTCATCATCTGTACAAACTCTGTGGAGTGAAGCAGAGAGAGAGGAGGTCAGGCGGGCAGGCTAAGTGGCGAGCGGCCCTCCCCAACAAGAGGGATCTGGGGGCTTGTTCCTGA

CircID chr19:46608961|46609235
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MKRECAREKREIKRTGIASCPGGLHFAVIICTNSVE
Nucleotide Sequence TTGAAGAGAGAGTGCGCGCGCGAGAAGAGAGAGATCAAGAGAACGGGCATCGCCAGCTGCCCGGGGGGCCTTCACTTTGCAGTCATCATCTGTACAAACTCTGTGGAGTGA

CircID chr19:46608961|46609235
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MEQEENRSFRNKPPDPSCWGGPLAT
Nucleotide Sequence CTGGAACAAGAAGAGAATCGCAGCTTCAGGAACAAGCCCCCAGATCCCTCTTGTTGGGGAGGGCCGCTCGCCACTTAG

CircID chr19:46608961|46609235
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MTSSLSASLHRVCTDDDCKVKAPRAAGDARSLDLSLLARALSLQHSP
Nucleotide Sequence CTGACCTCCTCTCTCTCTGCTTCACTCCACAGAGTTTGTACAGATGATGACTGCAAAGTGAAGGCCCCCCGGGCAGCTGGCGATGCCCGTTCTCTTGATCTCTCTCTTCTCGCGCGCGCACTCTCTCTTCAACACTCCCCT

CircID chr19:46608961|46609235
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence MISGTRRESQLQEQAPRSLLLGRAARHLACPPDLLSLCFTPQSLYR
Nucleotide Sequence TTGATCTCTGGAACAAGAAGAGAATCGCAGCTTCAGGAACAAGCCCCCAGATCCCTCTTGTTGGGGAGGGCCGCTCGCCACTTAGCCTGCCCGCCTGACCTCCTCTCTCTCTGCTTCACTCCACAGAGTTTGTACAGATGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites