CircRNA Information

General Information
circRNA Basic Information
CircID chr19:46610120|46610287
Strand +
CircType exon
Host Gene ENSG00000160014.15;
Algorism CIRI2;
Sequence GGAGCACAGATGTGAGGAAGCGGCGCCAAGTCACCACGGAGAAGCGGGAGGTGCTGGCGGACCAGGACGCAGAGGCTGCTGTAGCTGCCGTCCCCTGGGCAGCTGGCCGACAAGACTGTTTTATTGCAGGTGCGTTCTCTTGAGAGCGTGGTGGGGCCCATCTTCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:46610120|46610287 hsa-miR-22-5p 0 0 1
chr19:46610120|46610287 hsa-miR-22-3p 0 0 1
chr19:46610120|46610287 hsa-miR-212-5p 0 0 1
chr19:46610120|46610287 hsa-miR-212-3p 0 0 1
chr19:46610120|46610287 hsa-miR-132-5p 0 0 1
chr19:46610120|46610287 hsa-miR-132-3p 0 0 1
chr19:46610120|46610287 hsa-miR-335-5p 0 0 1
chr19:46610120|46610287 hsa-miR-335-3p 0 0 1
chr19:46610120|46610287 hsa-miR-513c-5p 0 0 1
chr19:46610120|46610287 hsa-miR-513c-3p 0 0 1
chr19:46610120|46610287 hsa-miR-296-5p 1 1 1
chr19:46610120|46610287 hsa-miR-566 0 0 1
chr19:46610120|46610287 hsa-miR-516a-3p 0 0 1
chr19:46610120|46610287 hsa-miR-346 1 0 0
chr19:46610120|46610287 hsa-miR-548v 0 1 0
chr19:46610120|46610287 hsa-miR-4512 1 0 0
chr19:46610120|46610287 hsa-miR-4647 0 1 0
chr19:46610120|46610287 hsa-miR-4674 1 0 0
chr19:46610120|46610287 hsa-miR-9500 0 1 0
chr19:46610120|46610287 hsa-miR-9899 1 0 0
chr19:46610120|46610287 hsa-miR-103a-2-5p 0 1 0
chr19:46610120|46610287 hsa-miR-4665-3p 1 0 0
chr19:46610120|46610287 hsa-miR-874-5p 0 1 0
chr19:46610120|46610287 hsa-miR-6875-3p 1 0 0
chr19:46610120|46610287 hsa-miR-6765-3p 1 0 0
chr19:46610120|46610287 hsa-miR-1343-3p 1 0 0
chr19:46610120|46610287 hsa-miR-92b-5p 0 1 0
chr19:46610120|46610287 hsa-miR-3191-3p 0 1 0
chr19:46610120|46610287 hsa-miR-4758-3p 0 1 0
chr19:46610120|46610287 hsa-miR-670-3p 0 1 0
chr19:46610120|46610287 hsa-miR-4746-5p 1 0 0
chr19:46610120|46610287 hsa-miR-1915-3p 0 1 0
chr19:46610120|46610287 hsa-miR-6877-3p 0 1 0
chr19:46610120|46610287 hsa-miR-4722-3p 1 1 0
chr19:46610120|46610287 hsa-miR-6819-3p 0 1 0
chr19:46610120|46610287 hsa-miR-6764-5p 0 1 0
chr19:46610120|46610287 hsa-miR-103a-1-5p 0 1 0
chr19:46610120|46610287 hsa-miR-6820-3p 0 1 0
chr19:46610120|46610287 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr19:46610120|46610287
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MPSPGQLADKTVLLQVRSLESVVGPIFP
Nucleotide Sequence CTGCCGTCCCCTGGGCAGCTGGCCGACAAGACTGTTTTATTGCAGGTGCGTTCTCTTGAGAGCGTGGTGGGGCCCATCTTCCCT

CircID chr19:46610120|46610287
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MADQDAEAAVAAVPWAAGRQDCFIAGAFS
Nucleotide Sequence CTGGCGGACCAGGACGCAGAGGCTGCTGTAGCTGCCGTCCCCTGGGCAGCTGGCCGACAAGACTGTTTTATTGCAGGTGCGTTCTCTTGA

CircID chr19:46610120|46610287
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MGPTTLSRERTCNKTVLSASCPGDGSYSSLCVLVRQHLPLLRGDLAPLPHICA
Nucleotide Sequence ATGGGCCCCACCACGCTCTCAAGAGAACGCACCTGCAATAAAACAGTCTTGTCGGCCAGCTGCCCAGGGGACGGCAGCTACAGCAGCCTCTGCGTCCTGGTCCGCCAGCACCTCCCGCTTCTCCGTGGTGACTTGGCGCCGCTTCCTCACATCTGTGCT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites