CircRNA Information

General Information
circRNA Basic Information
CircID chr19:46620504|46620664
Strand -
CircType exon
Host Gene ENSG00000160013.7;
Algorism CIRI2;
Sequence CCTGGGGACAGGCACAGGACTTAGGTTTGTGTTCTGGGGCAGTCCCTGGGATCCGCAGCCCCCACCCTTCATCTGCCAGCTTCTCCATCTGTCTCCCCACCACCTGCACCCCCCCAGTTCTCATCTTGCAGCCAGTCAAGCTAGGTGGAATGTCTCAGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:46620504|46620664 hsa-miR-146a-5p 0 0 1
chr19:46620504|46620664 hsa-miR-146a-3p 0 0 1
chr19:46620504|46620664 hsa-miR-589-5p 0 0 1
chr19:46620504|46620664 hsa-miR-589-3p 0 0 1
chr19:46620504|46620664 hsa-miR-604 0 1 1
chr19:46620504|46620664 hsa-miR-637 1 1 1
chr19:46620504|46620664 hsa-miR-647 0 0 1
chr19:46620504|46620664 hsa-miR-657 0 0 1
chr19:46620504|46620664 hsa-miR-892b 0 0 1
chr19:46620504|46620664 hsa-miR-541-5p 0 0 1
chr19:46620504|46620664 hsa-miR-541-3p 0 0 1
chr19:46620504|46620664 hsa-miR-939-5p 0 0 1
chr19:46620504|46620664 hsa-miR-939-3p 0 0 1
chr19:46620504|46620664 hsa-miR-943 0 0 1
chr19:46620504|46620664 hsa-miR-1288-5p 0 0 1
chr19:46620504|46620664 hsa-miR-1288-3p 0 0 1
chr19:46620504|46620664 hsa-miR-127-3p 0 0 1
chr19:46620504|46620664 hsa-miR-491-5p 0 0 1
chr19:46620504|46620664 hsa-miR-654-5p 1 0 1
chr19:46620504|46620664 hsa-miR-324-3p 0 0 1
chr19:46620504|46620664 hsa-miR-342-5p 0 0 1
chr19:46620504|46620664 hsa-miR-146b-5p 0 0 1
chr19:46620504|46620664 hsa-miR-550 0 0 1
chr19:46620504|46620664 hsa-miR-608 1 0 0
chr19:46620504|46620664 hsa-miR-762 1 0 0
chr19:46620504|46620664 hsa-miR-765 1 1 0
chr19:46620504|46620664 hsa-miR-298 1 0 0
chr19:46620504|46620664 hsa-miR-1293 1 0 0
chr19:46620504|46620664 hsa-miR-1270 1 0 0
chr19:46620504|46620664 hsa-miR-3131 1 0 0
chr19:46620504|46620664 hsa-miR-3153 1 0 0
chr19:46620504|46620664 hsa-miR-3185 1 0 0
chr19:46620504|46620664 hsa-miR-3196 1 0 0
chr19:46620504|46620664 hsa-miR-4298 1 0 0
chr19:46620504|46620664 hsa-miR-4324 0 1 0
chr19:46620504|46620664 hsa-miR-4271 1 0 0
chr19:46620504|46620664 hsa-miR-3665 1 1 0
chr19:46620504|46620664 hsa-miR-3916 1 0 0
chr19:46620504|46620664 hsa-miR-4434 1 0 0
chr19:46620504|46620664 hsa-miR-4440 1 0 0
chr19:46620504|46620664 hsa-miR-4447 0 1 0
chr19:46620504|46620664 hsa-miR-4463 1 0 0
chr19:46620504|46620664 hsa-miR-4466 1 0 0
chr19:46620504|46620664 hsa-miR-4487 1 0 0
chr19:46620504|46620664 hsa-miR-4488 1 0 0
chr19:46620504|46620664 hsa-miR-4498 1 0 0
chr19:46620504|46620664 hsa-miR-4516 1 0 0
chr19:46620504|46620664 hsa-miR-4534 0 1 0
chr19:46620504|46620664 hsa-miR-1587 1 0 0
chr19:46620504|46620664 hsa-miR-4651 1 0 0
chr19:46620504|46620664 hsa-miR-4689 1 0 0
chr19:46620504|46620664 hsa-miR-4706 1 0 0
chr19:46620504|46620664 hsa-miR-4730 1 0 0
chr19:46620504|46620664 hsa-miR-4739 1 0 0
chr19:46620504|46620664 hsa-miR-4752 0 1 0
chr19:46620504|46620664 hsa-miR-4784 1 0 0
chr19:46620504|46620664 hsa-miR-5698 1 0 0
chr19:46620504|46620664 hsa-miR-5703 1 1 0
chr19:46620504|46620664 hsa-miR-5787 1 0 0
chr19:46620504|46620664 hsa-miR-6085 1 0 0
chr19:46620504|46620664 hsa-miR-6088 1 1 0
chr19:46620504|46620664 hsa-miR-8052 0 1 0
chr19:46620504|46620664 hsa-miR-8073 1 0 0
chr19:46620504|46620664 hsa-miR-8089 1 0 0
chr19:46620504|46620664 hsa-miR-134-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4433b-3p 1 0 0
chr19:46620504|46620664 hsa-miR-92a-2-5p 0 1 0
chr19:46620504|46620664 hsa-miR-4731-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6747-5p 1 0 0
chr19:46620504|46620664 hsa-miR-3150a-3p 1 0 0
chr19:46620504|46620664 hsa-miR-7106-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6825-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6894-5p 1 0 0
chr19:46620504|46620664 hsa-miR-125a-3p 1 0 0
chr19:46620504|46620664 hsa-miR-6799-5p 1 0 0
chr19:46620504|46620664 hsa-miR-139-3p 1 0 0
chr19:46620504|46620664 hsa-miR-6089 1 0 0
chr19:46620504|46620664 hsa-miR-3192-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6757-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6880-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4695-5p 1 0 0
chr19:46620504|46620664 hsa-miR-3064-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6730-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6890-5p 1 0 0
chr19:46620504|46620664 hsa-miR-5589-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6776-5p 1 0 0
chr19:46620504|46620664 hsa-miR-7845-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6742-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6748-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6772-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6829-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6732-5p 1 0 0
chr19:46620504|46620664 hsa-miR-1224-5p 1 1 0
chr19:46620504|46620664 hsa-miR-3126-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6760-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6782-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6874-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6715b-3p 0 1 0
chr19:46620504|46620664 hsa-miR-6810-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6786-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6835-5p 1 0 0
chr19:46620504|46620664 hsa-miR-7109-5p 1 0 0
chr19:46620504|46620664 hsa-miR-1908-5p 1 0 0
chr19:46620504|46620664 hsa-miR-1228-5p 1 0 0
chr19:46620504|46620664 hsa-miR-877-5p 1 0 0
chr19:46620504|46620664 hsa-miR-485-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4787-5p 1 0 0
chr19:46620504|46620664 hsa-miR-149-3p 1 0 0
chr19:46620504|46620664 hsa-miR-6802-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4684-3p 1 0 0
chr19:46620504|46620664 hsa-miR-6878-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6811-3p 0 1 0
chr19:46620504|46620664 hsa-miR-1910-5p 1 1 0
chr19:46620504|46620664 hsa-miR-1914-5p 0 1 0
chr19:46620504|46620664 hsa-miR-6838-3p 0 1 0
chr19:46620504|46620664 hsa-miR-5002-3p 0 1 0
chr19:46620504|46620664 hsa-miR-4763-3p 1 0 0
chr19:46620504|46620664 hsa-miR-6769b-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6778-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6787-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6812-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6816-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6865-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6870-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6893-5p 1 0 0
chr19:46620504|46620664 hsa-miR-1343-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6726-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6737-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6752-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6756-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6769a-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6803-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6813-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6819-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6851-5p 1 0 0
chr19:46620504|46620664 hsa-miR-7110-5p 1 1 0
chr19:46620504|46620664 hsa-miR-11181-3p 1 0 0
chr19:46620504|46620664 hsa-miR-6751-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6763-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6779-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6780a-5p 1 0 0
chr19:46620504|46620664 hsa-miR-3620-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6780b-5p 1 0 0
chr19:46620504|46620664 hsa-miR-328-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4725-3p 1 0 0
chr19:46620504|46620664 hsa-miR-4726-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4745-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6794-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6795-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6846-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6848-5p 1 1 0
chr19:46620504|46620664 hsa-miR-6883-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6887-5p 1 1 0
chr19:46620504|46620664 hsa-miR-3199 0 1 0
chr19:46620504|46620664 hsa-miR-6511a-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6511b-5p 1 0 0
chr19:46620504|46620664 hsa-miR-6731-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4665-5p 1 0 0
chr19:46620504|46620664 hsa-miR-4472 0 1 0
chr19:46620504|46620664 hsa-miR-6766-5p 1 1 0
chr19:46620504|46620664 hsa-miR-4667-5p 1 1 0
chr19:46620504|46620664 hsa-miR-9851-5p 1 1 0
chr19:46620504|46620664 hsa-miR-320a-3p 1 0 0
chr19:46620504|46620664 hsa-miR-320c 1 0 0
chr19:46620504|46620664 hsa-miR-6529-3p 0 1 0
chr19:46620504|46620664 hsa-miR-6764-5p 0 1 0
chr19:46620504|46620664 hsa-miR-6504-5p 1 0 0
chr19:46620504|46620664 hsa-miR-7153-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:46620504|46620664
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MGQSLGSAAPTLHLPASPSVSPPPAPPQFSSCSQSS
Nucleotide Sequence CTGGGGCAGTCCCTGGGATCCGCAGCCCCCACCCTTCATCTGCCAGCTTCTCCATCTGTCTCCCCACCACCTGCACCCCCCCAGTTCTCATCTTGCAGCCAGTCAAGCTAG
CircID chr19:46620504|46620664
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence LGTGTGLRFVFWGSPWDPQPPPFICQLLHLSPHHLHPPSSHLAASQARWNVSG
Nucleotide Sequence CTGGGGACAGGCACAGGACTTAGGTTTGTGTTCTGGGGCAGTCCCTGGGATCCGCAGCCCCCACCCTTCATCTGCCAGCTTCTCCATCTGTCTCCCCACCACCTGCACCCCCCCAGTTCTCATCTTGCAGCCAGTCAAGCTAGGTGGAATGTCTCAGGC
CircID chr19:46620504|46620664
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MCSGAVPGIRSPHPSSASFSICLPTTCTPPVLILQPVKLGGMSQA
Nucleotide Sequence TTGTGTTCTGGGGCAGTCCCTGGGATCCGCAGCCCCCACCCTTCATCTGCCAGCTTCTCCATCTGTCTCCCCACCACCTGCACCCCCCCAGTTCTCATCTTGCAGCCAGTCAAGCTAGGTGGAATGTCTCAGGCC
CircID chr19:46620504|46620664
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MTGCKMRTGGVQVVGRQMEKLADEGWGLRIPGTAPEHKPKSCACPQ
Nucleotide Sequence TTGACTGGCTGCAAGATGAGAACTGGGGGGGTGCAGGTGGTGGGGAGACAGATGGAGAAGCTGGCAGATGAAGGGTGGGGGCTGCGGATCCCAGGGACTGCCCCAGAACACAAACCTAAGTCCTGTGCCTGTCCCCAG
CircID chr19:46620504|46620664
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MGGCRWWGDRWRSWQMKGGGCGSQGLPQNTNLSPVPVPR
Nucleotide Sequence CTGGGGGGGTGCAGGTGGTGGGGAGACAGATGGAGAAGCTGGCAGATGAAGGGTGGGGGCTGCGGATCCCAGGGACTGCCCCAGAACACAAACCTAAGTCCTGTGCCTGTCCCCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab