CircRNA Information

General Information
circRNA Basic Information
CircID chr19:46652681|46652997
Strand -
CircType exon
Host Gene ENSG00000197380.9;
Algorism CIRI2;
Sequence TGGCATAGATGCCCCGGGGCTCAGAGGGACCCAGGCGACCATAGGAGCTGGATCCAGAGAAGCCACTGTCCCCACAGAAGGTTGAGGGTGGTGAATCTGGACCTCCTGTAGAGCTGGGATCTTCATAGAAGCCCGAGCTACGCCCGCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:46652681|46652997 hsa-miR-197-5p 0 0 1
chr19:46652681|46652997 hsa-miR-197-3p 0 0 1
chr19:46652681|46652997 hsa-miR-198 0 0 1
chr19:46652681|46652997 hsa-miR-326 0 0 1
chr19:46652681|46652997 hsa-miR-585-5p 0 0 1
chr19:46652681|46652997 hsa-miR-585-3p 0 0 1
chr19:46652681|46652997 hsa-miR-661 1 1 1
chr19:46652681|46652997 hsa-miR-942-5p 0 0 1
chr19:46652681|46652997 hsa-miR-942-3p 0 0 1
chr19:46652681|46652997 hsa-miR-1237-5p 0 0 1
chr19:46652681|46652997 hsa-miR-1237-3p 0 0 1
chr19:46652681|46652997 hsa-miR-139-5p 0 0 1
chr19:46652681|46652997 hsa-miR-1225-3p 0 0 1
chr19:46652681|46652997 hsa-miR-491-5p 0 0 1
chr19:46652681|46652997 hsa-miR-330-5p 0 0 1
chr19:46652681|46652997 hsa-miR-220b 0 0 1
chr19:46652681|46652997 hsa-miR-1233 0 0 1
chr19:46652681|46652997 hsa-miR-642 0 0 1
chr19:46652681|46652997 hsa-miR-4267 0 1 0
chr19:46652681|46652997 hsa-miR-1268b 1 0 0
chr19:46652681|46652997 hsa-miR-9901 1 1 0
chr19:46652681|46652997 hsa-miR-6796-5p 0 1 0
chr19:46652681|46652997 hsa-miR-6810-5p 0 1 0
chr19:46652681|46652997 hsa-miR-6815-3p 0 1 0
chr19:46652681|46652997 hsa-miR-4690-5p 1 0 0
chr19:46652681|46652997 hsa-miR-3191-5p 0 1 0
chr19:46652681|46652997 hsa-miR-6501-5p 1 0 0
chr19:46652681|46652997 hsa-miR-3158-3p 1 0 0
chr19:46652681|46652997 hsa-miR-34a-5p 0 1 0
chr19:46652681|46652997 hsa-miR-584-5p 0 1 0
chr19:46652681|46652997 hsa-miR-99a-3p 0 1 0
chr19:46652681|46652997 hsa-miR-6787-5p 1 0 0
chr19:46652681|46652997 hsa-miR-10396b-5p 1 0 0
chr19:46652681|46652997 hsa-miR-4649-5p 1 0 0
chr19:46652681|46652997 hsa-miR-10396a-3p 0 1 0
chr19:46652681|46652997 hsa-miR-10396b-3p 0 1 0
chr19:46652681|46652997 hsa-miR-1199-5p 1 1 0
chr19:46652681|46652997 hsa-miR-6724-5p 1 0 0
chr19:46652681|46652997 hsa-miR-3059-5p 1 0 0
chr19:46652681|46652997 hsa-miR-519a-2-5p 0 1 0
chr19:46652681|46652997 hsa-miR-520b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr19:46652681|46652997
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MDPEKPLSPQKVEGGESGPPVELGSS
Nucleotide Sequence CTGGATCCAGAGAAGCCACTGTCCCCACAGAAGGTTGAGGGTGGTGAATCTGGACCTCCTGTAGAGCTGGGATCTTCATAG

CircID chr19:46652681|46652997
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MKIPALQEVQIHHPQPSVGTVASLDPAPMVAWVPLSPGASMP
Nucleotide Sequence ATGAAGATCCCAGCTCTACAGGAGGTCCAGATTCACCACCCTCAACCTTCTGTGGGGACAGTGGCTTCTCTGGATCCAGCTCCTATGGTCGCCTGGGTCCCTCTGAGCCCCGGGGCATCTATGCCA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites