CircRNA Information

General Information
circRNA Basic Information
CircID chr19:4675481|4675662
Strand -
CircType exon
Host Gene ENSG00000142002.15;
Algorism CIRI2;
Sequence GGGTCAGGCAGACACATGTGGCTGGGCGGCTGGGCTGGGGAGGGGACAGCCGCCACTGACCAGCAGAGCGTGGAAGTTCGGTGCGTTTCAGTGCCTGCCTGAAAGCTTGGGGACAGGAGGGCTGTCCACAGGTGGTGCCCCCCGCGGGCCCTGGCCGCTTCTCCTGTGGGGCCCGCATGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:4675481|4675662 hsa-miR-346 0 0 1
chr19:4675481|4675662 hsa-miR-632 0 0 1
chr19:4675481|4675662 hsa-miR-940 0 0 1
chr19:4675481|4675662 hsa-miR-296-5p 0 0 1
chr19:4675481|4675662 hsa-miR-220b 0 0 1
chr19:4675481|4675662 hsa-miR-138 0 0 1
chr19:4675481|4675662 hsa-miR-1201 0 0 1
chr19:4675481|4675662 hsa-miR-638 1 0 0
chr19:4675481|4675662 hsa-miR-663a 1 0 0
chr19:4675481|4675662 hsa-miR-1913 1 0 0
chr19:4675481|4675662 hsa-miR-4322 1 0 0
chr19:4675481|4675662 hsa-miR-4269 0 1 0
chr19:4675481|4675662 hsa-miR-4290 0 1 0
chr19:4675481|4675662 hsa-miR-4466 1 0 0
chr19:4675481|4675662 hsa-miR-4514 0 1 0
chr19:4675481|4675662 hsa-miR-4516 1 1 0
chr19:4675481|4675662 hsa-miR-4734 1 0 0
chr19:4675481|4675662 hsa-miR-5685 0 1 0
chr19:4675481|4675662 hsa-miR-5703 0 1 0
chr19:4675481|4675662 hsa-miR-6069 1 1 0
chr19:4675481|4675662 hsa-miR-6131 0 1 0
chr19:4675481|4675662 hsa-miR-7974 1 0 0
chr19:4675481|4675662 hsa-miR-10226 0 1 0
chr19:4675481|4675662 hsa-miR-6749-3p 1 1 0
chr19:4675481|4675662 hsa-miR-3194-3p 0 1 0
chr19:4675481|4675662 hsa-miR-3692-5p 0 1 0
chr19:4675481|4675662 hsa-miR-6089 1 0 0
chr19:4675481|4675662 hsa-miR-6746-5p 1 0 0
chr19:4675481|4675662 hsa-miR-4722-5p 0 1 0
chr19:4675481|4675662 hsa-miR-3677-5p 1 1 0
chr19:4675481|4675662 hsa-miR-593-5p 0 1 0
chr19:4675481|4675662 hsa-miR-874-5p 1 1 0
chr19:4675481|4675662 hsa-miR-6768-5p 1 1 0
chr19:4675481|4675662 hsa-miR-4697-3p 0 1 0
chr19:4675481|4675662 hsa-miR-6716-3p 0 1 0
chr19:4675481|4675662 hsa-miR-221-3p 0 1 0
chr19:4675481|4675662 hsa-miR-6763-3p 1 0 0
chr19:4675481|4675662 hsa-miR-4640-5p 1 0 0
chr19:4675481|4675662 hsa-miR-642b-5p 1 0 0
chr19:4675481|4675662 hsa-miR-4667-3p 0 1 0
chr19:4675481|4675662 hsa-miR-4646-3p 1 0 0
chr19:4675481|4675662 hsa-miR-660-3p 0 1 0
chr19:4675481|4675662 hsa-miR-4687-5p 0 1 0
chr19:4675481|4675662 hsa-miR-4758-3p 0 1 0
chr19:4675481|4675662 hsa-miR-4632-3p 0 1 0
chr19:4675481|4675662 hsa-miR-6826-3p 0 1 0
chr19:4675481|4675662 hsa-miR-6856-3p 0 1 0
chr19:4675481|4675662 hsa-miR-6886-3p 0 1 0
chr19:4675481|4675662 hsa-miR-6770-3p 0 1 0
chr19:4675481|4675662 hsa-miR-4763-3p 1 0 0
chr19:4675481|4675662 hsa-miR-6808-5p 0 1 0
chr19:4675481|4675662 hsa-miR-4685-5p 0 1 0
chr19:4675481|4675662 hsa-miR-6885-5p 0 1 0
chr19:4675481|4675662 hsa-miR-6724-5p 1 1 0
chr19:4675481|4675662 hsa-miR-6756-3p 1 0 0
chr19:4675481|4675662 hsa-miR-6837-5p 0 1 0
chr19:4675481|4675662 hsa-miR-9851-3p 0 1 0
chr19:4675481|4675662 hsa-miR-4756-5p 1 0 0
chr19:4675481|4675662 hsa-miR-4690-3p 1 1 0
chr19:4675481|4675662 hsa-miR-376b-5p 0 1 0
chr19:4675481|4675662 hsa-miR-376c-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:4675481|4675662
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MWLGGWAGEGTAATDQQSVEVRCVSVPA
Nucleotide Sequence ATGTGGCTGGGCGGCTGGGCTGGGGAGGGGACAGCCGCCACTGACCAGCAGAGCGTGGAAGTTCGGTGCGTTTCAGTGCCTGCCTGA
CircID chr19:4675481|4675662
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MGRGQPPLTSRAWKFGAFQCLPESLGTGGLSTGGAPRGPWPLLLWGPHD
Nucleotide Sequence CTGGGGAGGGGACAGCCGCCACTGACCAGCAGAGCGTGGAAGTTCGGTGCGTTTCAGTGCCTGCCTGAAAGCTTGGGGACAGGAGGGCTGTCCACAGGTGGTGCCCCCCGCGGGCCCTGGCCGCTTCTCCTGTGGGGCCCGCATGAC
CircID chr19:4675481|4675662
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MKAWGQEGCPQVVPPAGPGRFSCGARMT
Nucleotide Sequence CTGAAAGCTTGGGGACAGGAGGGCTGTCCACAGGTGGTGCCCCCCGCGGGCCCTGGCCGCTTCTCCTGTGGGGCCCGCATGACC
CircID chr19:4675481|4675662
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MWTALLSPSFQAGTETHRTSTLCWSVAAVPSPAQPPSHMCLPD
Nucleotide Sequence CTGTGGACAGCCCTCCTGTCCCCAAGCTTTCAGGCAGGCACTGAAACGCACCGAACTTCCACGCTCTGCTGGTCAGTGGCGGCTGTCCCCTCCCCAGCCCAGCCGCCCAGCCACATGTGTCTGCCTGAC
CircID chr19:4675481|4675662
ORF Type ORF5
Protein Length 59
Nucleotide Length 177
Protein Sequence MRAPQEKRPGPAGGTTCGQPSCPQAFRQALKRTELPRSAGQWRLSPPQPSRPATCVCLT
Nucleotide Sequence ATGCGGGCCCCACAGGAGAAGCGGCCAGGGCCCGCGGGGGGCACCACCTGTGGACAGCCCTCCTGTCCCCAAGCTTTCAGGCAGGCACTGAAACGCACCGAACTTCCACGCTCTGCTGGTCAGTGGCGGCTGTCCCCTCCCCAGCCCAGCCGCCCAGCCACATGTGTCTGCCTGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab