CircRNA Information

General Information
circRNA Basic Information
CircID chr19:47375640|47375989
Strand -
CircType exon
Host Gene ENSG00000134815.17;
Algorism CIRI2;
Sequence GGCGGCTCCAGTGACGAGGACAGGGCTGGCCCAGCCCCCCCAGGGGCCAGTGATGGCGTGGACATCCAGGTGGGCGCCATGGGCTGTGGGGTGTGGGGGTTTACCAAGGTGGGCCTTGGCCTCTCCTGGGGGGGTCCCAGGGGACATGGCCCTGTCCTCATTTCAGGAGCCGGGTTTCCATGGACGGTGCTTGGTCCCAGGTATCTGCAGAGCCTGGGGGTCTGCGGATCATGGTAGGAGCCCCTCAGGTCCCCTAAGACTCTGCCTCCCCGTGCTCCCCCCAGGATGTGAAGTTCAAGCTTCGGCATGACCTGGCGCAGCTGCAGGCCGCTGCCAGCTCAGCCCAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:47375640|47375989 hsa-miR-23a-5p 0 0 1
chr19:47375640|47375989 hsa-miR-23a-3p 0 0 1
chr19:47375640|47375989 hsa-miR-23b-5p 0 0 1
chr19:47375640|47375989 hsa-miR-23b-3p 0 0 1
chr19:47375640|47375989 hsa-miR-484 0 0 1
chr19:47375640|47375989 hsa-miR-492 0 1 1
chr19:47375640|47375989 hsa-miR-193b-5p 0 0 1
chr19:47375640|47375989 hsa-miR-193b-3p 0 0 1
chr19:47375640|47375989 hsa-miR-558 0 0 1
chr19:47375640|47375989 hsa-miR-619-5p 0 0 1
chr19:47375640|47375989 hsa-miR-619-3p 0 0 1
chr19:47375640|47375989 hsa-miR-637 1 1 1
chr19:47375640|47375989 hsa-miR-650 0 1 1
chr19:47375640|47375989 hsa-miR-652-5p 0 0 1
chr19:47375640|47375989 hsa-miR-652-3p 0 0 1
chr19:47375640|47375989 hsa-miR-1301-5p 0 0 1
chr19:47375640|47375989 hsa-miR-1301-3p 0 0 1
chr19:47375640|47375989 hsa-miR-665 0 1 1
chr19:47375640|47375989 hsa-miR-760 0 1 1
chr19:47375640|47375989 hsa-miR-924 0 0 1
chr19:47375640|47375989 hsa-miR-939-5p 0 0 1
chr19:47375640|47375989 hsa-miR-939-3p 0 0 1
chr19:47375640|47375989 hsa-miR-1234-3p 0 0 1
chr19:47375640|47375989 hsa-miR-1205 0 0 1
chr19:47375640|47375989 hsa-miR-1827 0 0 1
chr19:47375640|47375989 hsa-miR-1234 0 0 1
chr19:47375640|47375989 hsa-miR-1224-5p 0 0 1
chr19:47375640|47375989 hsa-miR-885-3p 0 1 1
chr19:47375640|47375989 hsa-miR-146b-3p 0 0 1
chr19:47375640|47375989 hsa-miR-941 0 1 1
chr19:47375640|47375989 hsa-miR-339-5p 1 1 1
chr19:47375640|47375989 hsa-miR-1184 0 0 1
chr19:47375640|47375989 hsa-miR-423-5p 0 0 1
chr19:47375640|47375989 hsa-miR-566 0 0 1
chr19:47375640|47375989 hsa-miR-361-3p 0 1 1
chr19:47375640|47375989 hsa-miR-1224-3p 0 0 1
chr19:47375640|47375989 hsa-miR-331-3p 0 1 1
chr19:47375640|47375989 hsa-miR-193a-3p 0 0 1
chr19:47375640|47375989 hsa-miR-203 0 0 1
chr19:47375640|47375989 hsa-miR-638 1 0 0
chr19:47375640|47375989 hsa-miR-762 1 1 0
chr19:47375640|47375989 hsa-miR-1182 1 1 0
chr19:47375640|47375989 hsa-miR-3155a 0 1 0
chr19:47375640|47375989 hsa-miR-3196 1 0 0
chr19:47375640|47375989 hsa-miR-4292 0 1 0
chr19:47375640|47375989 hsa-miR-3649 0 1 0
chr19:47375640|47375989 hsa-miR-3943 1 0 0
chr19:47375640|47375989 hsa-miR-4449 1 0 0
chr19:47375640|47375989 hsa-miR-3155b 0 1 0
chr19:47375640|47375989 hsa-miR-4492 0 1 0
chr19:47375640|47375989 hsa-miR-4498 1 1 0
chr19:47375640|47375989 hsa-miR-4505 0 1 0
chr19:47375640|47375989 hsa-miR-4507 1 1 0
chr19:47375640|47375989 hsa-miR-1587 1 1 0
chr19:47375640|47375989 hsa-miR-4641 0 1 0
chr19:47375640|47375989 hsa-miR-4656 1 1 0
chr19:47375640|47375989 hsa-miR-4663 0 1 0
chr19:47375640|47375989 hsa-miR-4688 1 0 0
chr19:47375640|47375989 hsa-miR-4706 1 0 0
chr19:47375640|47375989 hsa-miR-4739 0 1 0
chr19:47375640|47375989 hsa-miR-5047 0 1 0
chr19:47375640|47375989 hsa-miR-5698 0 1 0
chr19:47375640|47375989 hsa-miR-6075 1 0 0
chr19:47375640|47375989 hsa-miR-6090 1 0 0
chr19:47375640|47375989 hsa-miR-8089 1 0 0
chr19:47375640|47375989 hsa-miR-12119 1 0 0
chr19:47375640|47375989 hsa-miR-6734-5p 1 1 0
chr19:47375640|47375989 hsa-miR-3194-3p 0 1 0
chr19:47375640|47375989 hsa-miR-6765-5p 1 0 0
chr19:47375640|47375989 hsa-miR-7106-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6825-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6720-5p 1 0 0
chr19:47375640|47375989 hsa-miR-1233-3p 1 1 0
chr19:47375640|47375989 hsa-miR-139-3p 1 0 0
chr19:47375640|47375989 hsa-miR-4695-5p 1 0 0
chr19:47375640|47375989 hsa-miR-4755-3p 0 1 0
chr19:47375640|47375989 hsa-miR-185-3p 0 1 0
chr19:47375640|47375989 hsa-miR-6798-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6765-3p 1 1 0
chr19:47375640|47375989 hsa-miR-532-3p 1 1 0
chr19:47375640|47375989 hsa-miR-1343-3p 0 1 0
chr19:47375640|47375989 hsa-miR-6786-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6852-5p 0 1 0
chr19:47375640|47375989 hsa-miR-7109-5p 0 1 0
chr19:47375640|47375989 hsa-miR-4793-5p 1 0 0
chr19:47375640|47375989 hsa-miR-3677-3p 1 0 0
chr19:47375640|47375989 hsa-miR-3678-3p 1 0 0
chr19:47375640|47375989 hsa-miR-6813-3p 1 1 0
chr19:47375640|47375989 hsa-miR-1910-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6508-3p 0 1 0
chr19:47375640|47375989 hsa-miR-6868-5p 0 1 0
chr19:47375640|47375989 hsa-miR-34a-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6856-3p 0 1 0
chr19:47375640|47375989 hsa-miR-653-3p 0 1 0
chr19:47375640|47375989 hsa-miR-6859-3p 0 1 0
chr19:47375640|47375989 hsa-miR-5004-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6748-3p 0 1 0
chr19:47375640|47375989 hsa-miR-6779-3p 0 1 0
chr19:47375640|47375989 hsa-miR-219b-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6732-3p 1 0 0
chr19:47375640|47375989 hsa-miR-1207-5p 1 0 0
chr19:47375640|47375989 hsa-miR-4763-3p 1 1 0
chr19:47375640|47375989 hsa-miR-6812-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6870-5p 1 1 0
chr19:47375640|47375989 hsa-miR-5001-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6726-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6743-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6756-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6803-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6813-5p 1 0 0
chr19:47375640|47375989 hsa-miR-7107-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6808-5p 1 0 0
chr19:47375640|47375989 hsa-miR-7111-5p 0 1 0
chr19:47375640|47375989 hsa-miR-3620-5p 1 1 0
chr19:47375640|47375989 hsa-miR-328-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6777-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6795-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6846-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6848-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6887-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6889-5p 1 1 0
chr19:47375640|47375989 hsa-miR-4723-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6831-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6885-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6511a-5p 1 1 0
chr19:47375640|47375989 hsa-miR-7843-5p 0 1 0
chr19:47375640|47375989 hsa-miR-324-3p 1 0 0
chr19:47375640|47375989 hsa-miR-3184-5p 1 1 0
chr19:47375640|47375989 hsa-miR-6791-5p 1 1 0
chr19:47375640|47375989 hsa-miR-9851-5p 0 1 0
chr19:47375640|47375989 hsa-miR-6775-3p 1 1 0
chr19:47375640|47375989 hsa-miR-10392-3p 1 0 0
chr19:47375640|47375989 hsa-miR-6783-3p 0 1 0
chr19:47375640|47375989 hsa-miR-4690-3p 1 0 0
chr19:47375640|47375989 hsa-miR-7156-5p 1 0 0
chr19:47375640|47375989 hsa-miR-6771-3p 0 1 0
chr19:47375640|47375989 hsa-miR-5699-3p 1 1 0
chr19:47375640|47375989 hsa-miR-6834-3p 0 1 0
chr19:47375640|47375989 hsa-miR-498-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:47375640|47375989
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MGCGVWGFTKVGLGLSWGGPRGHGPVLISGAGFPWTVLGPRYLQSLGVCGSW
Nucleotide Sequence ATGGGCTGTGGGGTGTGGGGGTTTACCAAGGTGGGCCTTGGCCTCTCCTGGGGGGGTCCCAGGGGACATGGCCCTGTCCTCATTTCAGGAGCCGGGTTTCCATGGACGGTGCTTGGTCCCAGGTATCTGCAGAGCCTGGGGGTCTGCGGATCATGGTAG
CircID chr19:47375640|47375989
ORF Type ORF2
Protein Length 94
Nucleotide Length 285
Protein Sequence MAQPPQGPVMAWTSRWAPWAVGCGGLPRWALASPGGVPGDMALSSFQEPGFHGRCLVPGICRAWGSADHGRSPSGPLRLCLPVLPPGCEVQASA
Nucleotide Sequence CTGGCCCAGCCCCCCCAGGGGCCAGTGATGGCGTGGACATCCAGGTGGGCGCCATGGGCTGTGGGGTGTGGGGGTTTACCAAGGTGGGCCTTGGCCTCTCCTGGGGGGGTCCCAGGGGACATGGCCCTGTCCTCATTTCAGGAGCCGGGTTTCCATGGACGGTGCTTGGTCCCAGGTATCTGCAGAGCCTGGGGGTCTGCGGATCATGGTAGGAGCCCCTCAGGTCCCCTAAGACTCTGCCTCCCCGTGCTCCCCCCAGGATGTGAAGTTCAAGCTTCGGCATGA
CircID chr19:47375640|47375989
ORF Type ORF3
Protein Length 57
Nucleotide Length 174
Protein Sequence MWGVGVYQGGPWPLLGGSQGTWPCPHFRSRVSMDGAWSQVSAEPGGLRIMVGAPQVP
Nucleotide Sequence CTGTGGGGTGTGGGGGTTTACCAAGGTGGGCCTTGGCCTCTCCTGGGGGGGTCCCAGGGGACATGGCCCTGTCCTCATTTCAGGAGCCGGGTTTCCATGGACGGTGCTTGGTCCCAGGTATCTGCAGAGCCTGGGGGTCTGCGGATCATGGTAGGAGCCCCTCAGGTCCCCTAA
CircID chr19:47375640|47375989
ORF Type ORF4
Protein Length 108
Nucleotide Length 324
Protein Sequence MQLRQVMPKLELHILGGARGGRVLGDLRGSYHDPQTPRLCRYLGPSTVHGNPAPEMRTGPCPLGPPQERPRPTLVNPHTPQPMAPTWMSTPSLAPGGAGPALSSSLEP
Nucleotide Sequence CTGCAGCTGCGCCAGGTCATGCCGAAGCTTGAACTTCACATCCTGGGGGGAGCACGGGGAGGCAGAGTCTTAGGGGACCTGAGGGGCTCCTACCATGATCCGCAGACCCCCAGGCTCTGCAGATACCTGGGACCAAGCACCGTCCATGGAAACCCGGCTCCTGAAATGAGGACAGGGCCATGTCCCCTGGGACCCCCCCAGGAGAGGCCAAGGCCCACCTTGGTAAACCCCCACACCCCACAGCCCATGGCGCCCACCTGGATGTCCACGCCATCACTGGCCCCTGGGGGGGCTGGGCCAGCCCTGTCCTCGTCACTGGAGCCG
CircID chr19:47375640|47375989
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MAAACSCARSCRSLNFTSWGEHGEAES
Nucleotide Sequence CTGGCAGCGGCCTGCAGCTGCGCCAGGTCATGCCGAAGCTTGAACTTCACATCCTGGGGGGAGCACGGGGAGGCAGAGTCTTAG
CircID chr19:47375640|47375989
ORF Type ORF6
Protein Length 49
Nucleotide Length 147
Protein Sequence MSPGTPPGEAKAHLGKPPHPTAHGAHLDVHAITGPWGGWASPVLVTGAA
Nucleotide Sequence ATGTCCCCTGGGACCCCCCCAGGAGAGGCCAAGGCCCACCTTGGTAAACCCCCACACCCCACAGCCCATGGCGCCCACCTGGATGTCCACGCCATCACTGGCCCCTGGGGGGGCTGGGCCAGCCCTGTCCTCGTCACTGGAGCCGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab