CircRNA Information

General Information
circRNA Basic Information
CircID chr19:47487763|47488001
Strand +
CircType exon
Host Gene ENSG00000105402.6;
Algorism CIRI2;
Sequence CTATTTGCTAGGGGTGCTGCCGGGGATTTGGGGTCAGCATCTGGCCCCCTATCTCCTGACCAGCTGAGTCATGAGGCCGGTTTCTCTCTCTCTCCCACTTTTGTCCCCCAGCCAAGCTCTAAAGCACATGTAGCCGCTGAGACCTGCTGTTTCTGCTGGGGGCAGGCTCCTCTTCCCCCAGCCCCGGGAGCCTCCCCCAGCTTCCTGCAGCCCCGACCTCTCAGGTTAGACCCTGGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:47487763|47488001 hsa-miR-214-5p 0 0 1
chr19:47487763|47488001 hsa-miR-214-3p 0 0 1
chr19:47487763|47488001 hsa-miR-221-5p 0 0 1
chr19:47487763|47488001 hsa-miR-221-3p 0 0 1
chr19:47487763|47488001 hsa-miR-222-5p 0 0 1
chr19:47487763|47488001 hsa-miR-222-3p 0 0 1
chr19:47487763|47488001 hsa-miR-185-5p 0 0 1
chr19:47487763|47488001 hsa-miR-185-3p 0 0 1
chr19:47487763|47488001 hsa-miR-596 0 1 1
chr19:47487763|47488001 hsa-miR-605-5p 0 0 1
chr19:47487763|47488001 hsa-miR-605-3p 0 0 1
chr19:47487763|47488001 hsa-miR-625-5p 0 0 1
chr19:47487763|47488001 hsa-miR-625-3p 0 0 1
chr19:47487763|47488001 hsa-miR-636 0 0 1
chr19:47487763|47488001 hsa-miR-637 1 1 1
chr19:47487763|47488001 hsa-miR-647 0 0 1
chr19:47487763|47488001 hsa-miR-649 0 0 1
chr19:47487763|47488001 hsa-miR-922 0 1 1
chr19:47487763|47488001 hsa-miR-1182 0 1 1
chr19:47487763|47488001 hsa-miR-1205 0 0 1
chr19:47487763|47488001 hsa-miR-1286 0 0 1
chr19:47487763|47488001 hsa-miR-1303 0 0 1
chr19:47487763|47488001 hsa-miR-1275 0 1 1
chr19:47487763|47488001 hsa-miR-548p 0 0 1
chr19:47487763|47488001 hsa-miR-512-5p 0 0 1
chr19:47487763|47488001 hsa-miR-490-3p 0 0 1
chr19:47487763|47488001 hsa-miR-361-3p 0 0 1
chr19:47487763|47488001 hsa-miR-1207-3p 0 0 1
chr19:47487763|47488001 hsa-miR-628-5p 0 0 1
chr19:47487763|47488001 hsa-miR-324-3p 0 0 1
chr19:47487763|47488001 hsa-miR-218 0 0 1
chr19:47487763|47488001 hsa-miR-923 0 0 1
chr19:47487763|47488001 hsa-miR-762 1 1 0
chr19:47487763|47488001 hsa-miR-298 0 1 0
chr19:47487763|47488001 hsa-miR-1231 1 0 0
chr19:47487763|47488001 hsa-miR-1268a 1 0 0
chr19:47487763|47488001 hsa-miR-2861 1 0 0
chr19:47487763|47488001 hsa-miR-3135a 1 0 0
chr19:47487763|47488001 hsa-miR-4270 0 1 0
chr19:47487763|47488001 hsa-miR-4291 0 1 0
chr19:47487763|47488001 hsa-miR-3652 1 0 0
chr19:47487763|47488001 hsa-miR-3916 1 0 0
chr19:47487763|47488001 hsa-miR-1268b 1 0 0
chr19:47487763|47488001 hsa-miR-4449 1 1 0
chr19:47487763|47488001 hsa-miR-4498 0 1 0
chr19:47487763|47488001 hsa-miR-4505 1 1 0
chr19:47487763|47488001 hsa-miR-4507 1 0 0
chr19:47487763|47488001 hsa-miR-4508 0 1 0
chr19:47487763|47488001 hsa-miR-4530 0 1 0
chr19:47487763|47488001 hsa-miR-4538 0 1 0
chr19:47487763|47488001 hsa-miR-3960 1 0 0
chr19:47487763|47488001 hsa-miR-4644 0 1 0
chr19:47487763|47488001 hsa-miR-5787 1 1 0
chr19:47487763|47488001 hsa-miR-6085 0 1 0
chr19:47487763|47488001 hsa-miR-6088 1 0 0
chr19:47487763|47488001 hsa-miR-6131 0 1 0
chr19:47487763|47488001 hsa-miR-7150 1 0 0
chr19:47487763|47488001 hsa-miR-8085 0 1 0
chr19:47487763|47488001 hsa-miR-8089 1 0 0
chr19:47487763|47488001 hsa-miR-10226 1 0 0
chr19:47487763|47488001 hsa-miR-92a-1-5p 1 0 0
chr19:47487763|47488001 hsa-miR-4731-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6840-3p 1 0 0
chr19:47487763|47488001 hsa-miR-6825-5p 0 1 0
chr19:47487763|47488001 hsa-miR-7851-3p 0 1 0
chr19:47487763|47488001 hsa-miR-6089 1 0 0
chr19:47487763|47488001 hsa-miR-3192-5p 0 1 0
chr19:47487763|47488001 hsa-miR-4722-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6730-5p 1 0 0
chr19:47487763|47488001 hsa-miR-7154-3p 1 0 0
chr19:47487763|47488001 hsa-miR-6727-5p 1 1 0
chr19:47487763|47488001 hsa-miR-4728-3p 0 1 0
chr19:47487763|47488001 hsa-miR-6829-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6805-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6798-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6810-5p 1 0 0
chr19:47487763|47488001 hsa-miR-3934-3p 1 0 0
chr19:47487763|47488001 hsa-miR-7109-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6763-3p 0 1 0
chr19:47487763|47488001 hsa-miR-6784-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6823-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6749-5p 1 0 0
chr19:47487763|47488001 hsa-miR-149-3p 1 0 0
chr19:47487763|47488001 hsa-miR-3189-3p 1 0 0
chr19:47487763|47488001 hsa-miR-423-5p 1 0 0
chr19:47487763|47488001 hsa-miR-3191-3p 1 0 0
chr19:47487763|47488001 hsa-miR-4707-5p 0 1 0
chr19:47487763|47488001 hsa-miR-345-5p 0 1 0
chr19:47487763|47488001 hsa-miR-4638-5p 1 0 0
chr19:47487763|47488001 hsa-miR-4727-3p 1 0 0
chr19:47487763|47488001 hsa-miR-4750-3p 0 1 0
chr19:47487763|47488001 hsa-miR-4796-3p 0 1 0
chr19:47487763|47488001 hsa-miR-1233-5p 0 1 0
chr19:47487763|47488001 hsa-miR-1273h-5p 1 1 0
chr19:47487763|47488001 hsa-miR-4763-3p 1 0 0
chr19:47487763|47488001 hsa-miR-6769b-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6778-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6787-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6865-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6870-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6775-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6756-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6803-5p 1 0 0
chr19:47487763|47488001 hsa-miR-1249-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6751-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6780a-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6788-5p 0 1 0
chr19:47487763|47488001 hsa-miR-7111-5p 1 1 0
chr19:47487763|47488001 hsa-miR-1915-3p 1 0 0
chr19:47487763|47488001 hsa-miR-3620-5p 1 0 0
chr19:47487763|47488001 hsa-miR-4728-5p 1 0 0
chr19:47487763|47488001 hsa-miR-328-5p 1 1 0
chr19:47487763|47488001 hsa-miR-4685-5p 1 0 0
chr19:47487763|47488001 hsa-miR-4726-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6794-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6795-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6846-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6887-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6845-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6885-5p 1 0 0
chr19:47487763|47488001 hsa-miR-4758-5p 1 0 0
chr19:47487763|47488001 hsa-miR-4769-5p 1 0 0
chr19:47487763|47488001 hsa-miR-3940-5p 1 0 0
chr19:47487763|47488001 hsa-miR-30c-1-3p 0 1 0
chr19:47487763|47488001 hsa-miR-4665-5p 1 1 0
chr19:47487763|47488001 hsa-miR-6891-5p 1 0 0
chr19:47487763|47488001 hsa-miR-4667-5p 1 0 0
chr19:47487763|47488001 hsa-miR-6791-5p 1 0 0
chr19:47487763|47488001 hsa-miR-320a-3p 1 0 0
chr19:47487763|47488001 hsa-miR-6859-5p 0 1 0
chr19:47487763|47488001 hsa-miR-10394-5p 0 1 0
chr19:47487763|47488001 hsa-miR-3619-5p 0 1 0
chr19:47487763|47488001 hsa-miR-6764-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:47487763|47488001
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MGSASGPLSPDQLSHEAGFSLSPTFVPQPSSKAHVAAETCCFCWGQAPLPPAPGASPSFLQPRPLRLDPG
Nucleotide Sequence TTGGGGTCAGCATCTGGCCCCCTATCTCCTGACCAGCTGAGTCATGAGGCCGGTTTCTCTCTCTCTCCCACTTTTGTCCCCCAGCCAAGCTCTAAAGCACATGTAGCCGCTGAGACCTGCTGTTTCTGCTGGGGGCAGGCTCCTCTTCCCCCAGCCCCGGGAGCCTCCCCCAGCTTCCTGCAGCCCCGACCTCTCAGGTTAGACCCTGGG
CircID chr19:47487763|47488001
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MRPAVSAGGRLLFPQPREPPPASCSPDLSG
Nucleotide Sequence CTGAGACCTGCTGTTTCTGCTGGGGGCAGGCTCCTCTTCCCCCAGCCCCGGGAGCCTCCCCCAGCTTCCTGCAGCCCCGACCTCTCAGGTTAG
CircID chr19:47487763|47488001
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MLFLLGAGSSSPSPGSLPQLPAAPTSQVRPWA
Nucleotide Sequence CTGCTGTTTCTGCTGGGGGCAGGCTCCTCTTCCCCCAGCCCCGGGAGCCTCCCCCAGCTTCCTGCAGCCCCGACCTCTCAGGTTAGACCCTGGGCC
CircID chr19:47487763|47488001
ORF Type ORF4
Protein Length 51
Nucleotide Length 156
Protein Sequence MRGRGCRKLGEAPGAGGRGACPQQKQQVSAATCALELGWGTKVGEREKPAS
Nucleotide Sequence CTGAGAGGTCGGGGCTGCAGGAAGCTGGGGGAGGCTCCCGGGGCTGGGGGAAGAGGAGCCTGCCCCCAGCAGAAACAGCAGGTCTCAGCGGCTACATGTGCTTTAGAGCTTGGCTGGGGGACAAAAGTGGGAGAGAGAGAGAAACCGGCCTCATGA
CircID chr19:47487763|47488001
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MAGGQKWERERNRPHDSAGQEIGGQMLTPNPRQHP
Nucleotide Sequence TTGGCTGGGGGACAAAAGTGGGAGAGAGAGAGAAACCGGCCTCATGACTCAGCTGGTCAGGAGATAGGGGGCCAGATGCTGACCCCAAATCCCCGGCAGCACCCCTAG
CircID chr19:47487763|47488001
ORF Type ORF6
Protein Length 53
Nucleotide Length 162
Protein Sequence MQEAGGGSRGWGKRSLPPAETAGLSGYMCFRAWLGDKSGRERETGLMTQLVRR
Nucleotide Sequence CTGCAGGAAGCTGGGGGAGGCTCCCGGGGCTGGGGGAAGAGGAGCCTGCCCCCAGCAGAAACAGCAGGTCTCAGCGGCTACATGTGCTTTAGAGCTTGGCTGGGGGACAAAAGTGGGAGAGAGAGAGAAACCGGCCTCATGACTCAGCTGGTCAGGAGATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab