CircRNA Information

General Information
circRNA Basic Information
CircID chr19:47493021|47493433
Strand -
CircType exon
Host Gene ENSG00000105402.6;
Algorism CIRI2;
Sequence CTTCAGCAGACACTTGTTGGCTGAGCTGTGTGGGGAGGAGTAGTGAGGGGAAGTGGTGGCGGTCCCTGCGGGGCTGGGGCAGGCAGGAAGGGGGCTACCTGTTGGACTCCTCGCCTTTGTAGTAGTCTGCAGACTGCTCGTAGTGGGCAATGGCCTTCTCGATGTCCACCAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:47493021|47493433 hsa-miR-346 0 0 1
chr19:47493021|47493433 hsa-miR-622 0 1 1
chr19:47493021|47493433 hsa-miR-632 0 0 1
chr19:47493021|47493433 hsa-miR-1205 0 0 1
chr19:47493021|47493433 hsa-miR-1283 0 0 1
chr19:47493021|47493433 hsa-miR-1184 0 0 1
chr19:47493021|47493433 hsa-miR-1289 0 1 1
chr19:47493021|47493433 hsa-miR-524-5p 0 0 1
chr19:47493021|47493433 hsa-miR-324-3p 0 0 1
chr19:47493021|47493433 hsa-miR-520d-5p 0 1 1
chr19:47493021|47493433 hsa-miR-151-5p 0 0 1
chr19:47493021|47493433 hsa-miR-596 1 0 0
chr19:47493021|47493433 hsa-miR-636 1 0 0
chr19:47493021|47493433 hsa-miR-151b 0 1 0
chr19:47493021|47493433 hsa-miR-1913 1 1 0
chr19:47493021|47493433 hsa-miR-3138 0 1 0
chr19:47493021|47493433 hsa-miR-1260b 1 0 0
chr19:47493021|47493433 hsa-miR-4301 1 0 0
chr19:47493021|47493433 hsa-miR-4313 1 0 0
chr19:47493021|47493433 hsa-miR-4258 1 0 0
chr19:47493021|47493433 hsa-miR-4288 0 1 0
chr19:47493021|47493433 hsa-miR-3943 1 0 0
chr19:47493021|47493433 hsa-miR-4484 0 1 0
chr19:47493021|47493433 hsa-miR-4493 0 1 0
chr19:47493021|47493433 hsa-miR-3972 1 0 0
chr19:47493021|47493433 hsa-miR-197-3p 1 1 0
chr19:47493021|47493433 hsa-miR-6749-3p 1 1 0
chr19:47493021|47493433 hsa-miR-6747-3p 0 1 0
chr19:47493021|47493433 hsa-miR-3157-5p 0 1 0
chr19:47493021|47493433 hsa-miR-6836-3p 1 1 0
chr19:47493021|47493433 hsa-miR-6720-5p 1 1 0
chr19:47493021|47493433 hsa-miR-766-3p 0 1 0
chr19:47493021|47493433 hsa-miR-210-5p 1 0 0
chr19:47493021|47493433 hsa-miR-8071 0 1 0
chr19:47493021|47493433 hsa-miR-296-5p 1 0 0
chr19:47493021|47493433 hsa-miR-6875-3p 1 0 0
chr19:47493021|47493433 hsa-miR-874-3p 0 1 0
chr19:47493021|47493433 hsa-miR-1915-5p 1 0 0
chr19:47493021|47493433 hsa-miR-6770-5p 0 1 0
chr19:47493021|47493433 hsa-miR-6788-3p 1 0 0
chr19:47493021|47493433 hsa-miR-4436b-5p 1 0 0
chr19:47493021|47493433 hsa-miR-6884-3p 1 0 0
chr19:47493021|47493433 hsa-miR-4763-5p 1 1 0
chr19:47493021|47493433 hsa-miR-4707-3p 1 0 0
chr19:47493021|47493433 hsa-miR-1908-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6894-3p 0 1 0
chr19:47493021|47493433 hsa-miR-6803-3p 1 0 0
chr19:47493021|47493433 hsa-miR-4715-3p 1 0 0
chr19:47493021|47493433 hsa-miR-7113-3p 1 0 0
chr19:47493021|47493433 hsa-miR-7111-3p 1 1 0
chr19:47493021|47493433 hsa-miR-3648 1 0 0
chr19:47493021|47493433 hsa-miR-425-3p 0 1 0
chr19:47493021|47493433 hsa-miR-4667-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6769a-3p 1 0 0
chr19:47493021|47493433 hsa-miR-1236-3p 1 1 0
chr19:47493021|47493433 hsa-miR-6811-3p 1 0 0
chr19:47493021|47493433 hsa-miR-7106-3p 1 1 0
chr19:47493021|47493433 hsa-miR-4687-5p 1 0 0
chr19:47493021|47493433 hsa-miR-6730-3p 1 0 0
chr19:47493021|47493433 hsa-miR-4664-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6887-3p 1 0 0
chr19:47493021|47493433 hsa-miR-3074-5p 0 1 0
chr19:47493021|47493433 hsa-miR-6826-3p 1 1 0
chr19:47493021|47493433 hsa-miR-4529-5p 1 0 0
chr19:47493021|47493433 hsa-miR-5088-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6773-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6738-3p 0 1 0
chr19:47493021|47493433 hsa-miR-6795-3p 1 1 0
chr19:47493021|47493433 hsa-miR-6760-3p 1 0 0
chr19:47493021|47493433 hsa-miR-1227-3p 1 0 0
chr19:47493021|47493433 hsa-miR-1178-3p 1 0 0
chr19:47493021|47493433 hsa-miR-1255b-2-3p 0 1 0
chr19:47493021|47493433 hsa-miR-1229-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6734-3p 1 1 0
chr19:47493021|47493433 hsa-miR-6846-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6812-3p 1 0 0
chr19:47493021|47493433 hsa-miR-3127-3p 1 1 0
chr19:47493021|47493433 hsa-miR-4685-3p 1 1 0
chr19:47493021|47493433 hsa-miR-1909-3p 1 0 0
chr19:47493021|47493433 hsa-miR-4749-5p 1 0 0
chr19:47493021|47493433 hsa-miR-6777-5p 0 1 0
chr19:47493021|47493433 hsa-miR-10396a-3p 1 0 0
chr19:47493021|47493433 hsa-miR-10396b-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6799-3p 1 1 0
chr19:47493021|47493433 hsa-miR-4722-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6727-3p 1 0 0
chr19:47493021|47493433 hsa-miR-6756-3p 1 1 0
chr19:47493021|47493433 hsa-miR-6829-3p 1 0 0
chr19:47493021|47493433 hsa-miR-10392-3p 1 0 0
chr19:47493021|47493433 hsa-miR-3059-5p 1 0 0
chr19:47493021|47493433 hsa-miR-4723-3p 0 1 0
chr19:47493021|47493433 hsa-miR-6511b-3p 1 0 0
chr19:47493021|47493433 hsa-miR-4701-5p 1 0 0
chr19:47493021|47493433 hsa-miR-151a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:47493021|47493433
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MGQAGRGLPVGLLAFVVVCRLLVVGNGLLDVHQ
Nucleotide Sequence CTGGGGCAGGCAGGAAGGGGGCTACCTGTTGGACTCCTCGCCTTTGTAGTAGTCTGCAGACTGCTCGTAGTGGGCAATGGCCTTCTCGATGTCCACCAA

CircID chr19:47493021|47493433
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MSCVGRSSEGKWWRSLRGWGRQEGGYLLDSSPL
Nucleotide Sequence CTGAGCTGTGTGGGGAGGAGTAGTGAGGGGAAGTGGTGGCGGTCCCTGCGGGGCTGGGGCAGGCAGGAAGGGGGCTACCTGTTGGACTCCTCGCCTTTGTAG

CircID chr19:47493021|47493433
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence LVDIEKAIAHYEQSADYYKGEESNR
Nucleotide Sequence TTGGTGGACATCGAGAAGGCCATTGCCCACTACGAGCAGTCTGCAGACTACTACAAAGGCGAGGAGTCCAACAGGTAG

CircID chr19:47493021|47493433
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MPQPRRDRHHFPSLLLPTQLSQQVSAE
Nucleotide Sequence CTGCCCCAGCCCCGCAGGGACCGCCACCACTTCCCCTCACTACTCCTCCCCACACAGCTCAGCCAACAAGTGTCTGCTGAA

CircID chr19:47493021|47493433
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MPTTSSLQTTTKARSPTGSPLPACPSPAGTATTSPHYSSPHSSANKCLLK
Nucleotide Sequence TTGCCCACTACGAGCAGTCTGCAGACTACTACAAAGGCGAGGAGTCCAACAGGTAGCCCCCTTCCTGCCTGCCCCAGCCCCGCAGGGACCGCCACCACTTCCCCTCACTACTCCTCCCCACACAGCTCAGCCAACAAGTGTCTGCTGAAG

CircID chr19:47493021|47493433
ORF Type ORF6
Protein Length 27
Nucleotide Length 84
Protein Sequence MPAPAPQGPPPLPLTTPPHTAQPTSVC
Nucleotide Sequence CTGCCTGCCCCAGCCCCGCAGGGACCGCCACCACTTCCCCTCACTACTCCTCCCCACACAGCTCAGCCAACAAGTGTCTGCTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites