CircRNA Information

General Information
circRNA Basic Information
CircID chr19:47742040|47742211
Strand -
CircType exon
Host Gene ENSG00000024422.10;
Algorism CIRI2;
Sequence ACACCTACTGCTTCCTCAGATGGGCCCCTCCGCAGCCCCTTCCCTTGCTCGGGGAAAGCCCCCAATTCTGCCCACACCCATTTATTTCCTTCCTTCCTTCCTTCTTTTCTTTCCTTCCTTCCTTCTTTTTTGTTTTTGCCCCCAATTCTGCCCATACCCATTTCTTTCTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:47742040|47742211 hsa-miR-522-5p 0 0 1
chr19:47742040|47742211 hsa-miR-522-3p 0 0 1
chr19:47742040|47742211 hsa-miR-604 -8 1 1
chr19:47742040|47742211 hsa-miR-609 -8 0 1
chr19:47742040|47742211 hsa-miR-658 -13 0 1
chr19:47742040|47742211 hsa-miR-1275 -12 0 1
chr19:47742040|47742211 hsa-miR-1252-5p 0 0 1
chr19:47742040|47742211 hsa-miR-1252-3p 0 0 1
chr19:47742040|47742211 hsa-miR-423-5p -10 0 1
chr19:47742040|47742211 hsa-miR-3154 -21 1 0
chr19:47742040|47742211 hsa-miR-4476 -20 1 0
chr19:47742040|47742211 hsa-miR-4506 -15 1 0
chr19:47742040|47742211 hsa-miR-4739 -34 1 0
chr19:47742040|47742211 hsa-miR-4741 -22 1 0
chr19:47742040|47742211 hsa-miR-4779 -17 1 0
chr19:47742040|47742211 hsa-miR-6085 -16 1 0
chr19:47742040|47742211 hsa-miR-6124 -21 1 0
chr19:47742040|47742211 hsa-miR-6860 -16 1 0
chr19:47742040|47742211 hsa-miR-12119 0 1 0
chr19:47742040|47742211 hsa-miR-7106-5p -25 1 0
chr19:47742040|47742211 hsa-miR-4695-5p -19 1 0
chr19:47742040|47742211 hsa-miR-6829-5p -15 1 0
chr19:47742040|47742211 hsa-miR-6881-5p -19 1 0
chr19:47742040|47742211 hsa-miR-1229-5p -25 1 0
chr19:47742040|47742211 hsa-miR-6830-5p -20 1 0
chr19:47742040|47742211 hsa-miR-3200-5p 0 1 0
chr19:47742040|47742211 hsa-miR-6813-5p -14 1 0
chr19:47742040|47742211 hsa-miR-10401-5p -20 1 0
chr19:47742040|47742211 hsa-miR-1249-5p -24 1 0
chr19:47742040|47742211 hsa-miR-6797-5p -27 1 0
chr19:47742040|47742211 hsa-miR-5196-5p -24 1 0
chr19:47742040|47742211 hsa-miR-6846-5p -18 1 0
chr19:47742040|47742211 hsa-miR-6848-5p -22 1 0
chr19:47742040|47742211 hsa-miR-6885-5p -16 1 0
chr19:47742040|47742211 hsa-miR-6511a-5p -22 1 0
chr19:47742040|47742211 hsa-miR-3173-3p -18 1 0
chr19:47742040|47742211 hsa-miR-4747-5p -19 1 0
chr19:47742040|47742211 hsa-miR-6876-5p -19 1 0
chr19:47742040|47742211 hsa-miR-6891-5p -23 1 0
chr19:47742040|47742211 hsa-miR-4716-3p 0 1 0
chr19:47742040|47742211 hsa-miR-3184-5p -14 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:47742040|47742211
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MLPQMGPSAAPSLARGKPPILPTPIYFLPSFLLFFPSFLLFCFCPQFCPYPFLSF
Nucleotide Sequence CTGCTTCCTCAGATGGGCCCCTCCGCAGCCCCTTCCCTTGCTCGGGGAAAGCCCCCAATTCTGCCCACACCCATTTATTTCCTTCCTTCCTTCCTTCTTTTCTTTCCTTCCTTCCTTCTTTTTTGTTTTTGCCCCCAATTCTGCCCATACCCATTTCTTTCTTTC
CircID chr19:47742040|47742211
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MLGESPQFCPHPFISFLPSFFSFLPSFFFVFAPNSAHTHFFL
Nucleotide Sequence TTGCTCGGGGAAAGCCCCCAATTCTGCCCACACCCATTTATTTCCTTCCTTCCTTCCTTCTTTTCTTTCCTTCCTTCCTTCTTTTTTGTTTTTGCCCCCAATTCTGCCCATACCCATTTCTTTCTT
CircID chr19:47742040|47742211
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MGAKTKKKEGRKEKKEGRKEINGCGQNWGLSPSKGRGCGGAHLRKQ
Nucleotide Sequence TTGGGGGCAAAAACAAAAAAGAAGGAAGGAAGGAAAGAAAAGAAGGAAGGAAGGAAGGAAATAAATGGGTGTGGGCAGAATTGGGGGCTTTCCCCGAGCAAGGGAAGGGGCTGCGGAGGGGCCCATCTGAGGAAGCAGTAG
CircID chr19:47742040|47742211
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MGMGRIGGKNKKEGRKERKEGRKEGNKWVWAELGAFPEQGKGLRRGPSEEAVG
Nucleotide Sequence ATGGGTATGGGCAGAATTGGGGGCAAAAACAAAAAAGAAGGAAGGAAGGAAAGAAAAGAAGGAAGGAAGGAAGGAAATAAATGGGTGTGGGCAGAATTGGGGGCTTTCCCCGAGCAAGGGAAGGGGCTGCGGAGGGGCCCATCTGAGGAAGCAGTAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab