CircRNA Information

General Information
circRNA Basic Information
CircID chr19:47742427|47742734
Strand -
CircType exon
Host Gene ENSG00000024422.10;
Algorism CIRI2;
Sequence CACGCCCAGCTAATTTTTGTATTTGAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCGCATCTCAGGTGATCTGCTCGCCTTGGCCTCCCAAAGTGATGGGATTACAGGCATGAGCCACCGTGCCCGGCTTCACACCCATTTCTTTAAAAAGGATCCCGTAGCAGGCAGAAAAGCCCCTTCCATCCTGCTCCTCTGATACTGTGCCCCCTTGGAGATATTTCCGTCCTCCACCCACGTGTCTGTGGCTGGAACTGCCCAGCCTGCTCCTGGCCCCCTGGAAGCCTCCCCACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:47742427|47742734 hsa-miR-143-5p 0 0 1
chr19:47742427|47742734 hsa-miR-143-3p 0 0 1
chr19:47742427|47742734 hsa-miR-144-5p 0 0 1
chr19:47742427|47742734 hsa-miR-144-3p 0 0 1
chr19:47742427|47742734 hsa-miR-184 1 0 1
chr19:47742427|47742734 hsa-miR-186-5p 0 0 1
chr19:47742427|47742734 hsa-miR-186-3p 0 0 1
chr19:47742427|47742734 hsa-miR-564 1 0 1
chr19:47742427|47742734 hsa-miR-585-5p 0 0 1
chr19:47742427|47742734 hsa-miR-585-3p 0 0 1
chr19:47742427|47742734 hsa-miR-609 0 0 1
chr19:47742427|47742734 hsa-miR-612 0 0 1
chr19:47742427|47742734 hsa-miR-658 0 0 1
chr19:47742427|47742734 hsa-miR-765 0 0 1
chr19:47742427|47742734 hsa-miR-888-5p 0 0 1
chr19:47742427|47742734 hsa-miR-888-3p 0 0 1
chr19:47742427|47742734 hsa-miR-665 0 0 1
chr19:47742427|47742734 hsa-miR-939-5p 0 0 1
chr19:47742427|47742734 hsa-miR-939-3p 0 0 1
chr19:47742427|47742734 hsa-miR-1293 0 0 1
chr19:47742427|47742734 hsa-miR-491-5p 0 0 1
chr19:47742427|47742734 hsa-miR-361-5p 0 0 1
chr19:47742427|47742734 hsa-miR-501-5p 0 0 1
chr19:47742427|47742734 hsa-miR-515-5p 0 0 1
chr19:47742427|47742734 hsa-miR-1285 0 0 1
chr19:47742427|47742734 hsa-miR-1268 0 0 1
chr19:47742427|47742734 hsa-miR-544 0 0 1
chr19:47742427|47742734 hsa-miR-24 0 0 1
chr19:47742427|47742734 hsa-miR-637 1 0 0
chr19:47742427|47742734 hsa-miR-638 1 0 0
chr19:47742427|47742734 hsa-miR-663a 1 0 0
chr19:47742427|47742734 hsa-miR-2861 1 0 0
chr19:47742427|47742734 hsa-miR-3132 1 0 0
chr19:47742427|47742734 hsa-miR-3141 1 0 0
chr19:47742427|47742734 hsa-miR-3196 1 0 0
chr19:47742427|47742734 hsa-miR-3197 1 0 0
chr19:47742427|47742734 hsa-miR-3945 1 0 0
chr19:47742427|47742734 hsa-miR-4462 1 0 0
chr19:47742427|47742734 hsa-miR-4488 1 0 0
chr19:47742427|47742734 hsa-miR-4489 1 0 0
chr19:47742427|47742734 hsa-miR-4505 1 0 0
chr19:47742427|47742734 hsa-miR-4706 1 0 0
chr19:47742427|47742734 hsa-miR-5090 1 0 0
chr19:47742427|47742734 hsa-miR-6081 1 0 0
chr19:47742427|47742734 hsa-miR-6165 1 0 0
chr19:47742427|47742734 hsa-miR-12115 1 0 0
chr19:47742427|47742734 hsa-miR-150-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6765-5p 1 0 0
chr19:47742427|47742734 hsa-miR-7106-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6825-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6894-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6857-5p 1 0 0
chr19:47742427|47742734 hsa-miR-27a-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6799-5p 1 0 0
chr19:47742427|47742734 hsa-miR-3622a-5p 1 0 0
chr19:47742427|47742734 hsa-miR-1227-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4786-5p 1 0 0
chr19:47742427|47742734 hsa-miR-7114-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6089 1 0 0
chr19:47742427|47742734 hsa-miR-6880-5p 1 0 0
chr19:47742427|47742734 hsa-miR-7847-3p 1 0 0
chr19:47742427|47742734 hsa-miR-4695-5p 1 0 0
chr19:47742427|47742734 hsa-miR-593-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6890-5p 1 0 0
chr19:47742427|47742734 hsa-miR-24-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6721-5p 1 0 0
chr19:47742427|47742734 hsa-miR-197-5p 1 0 0
chr19:47742427|47742734 hsa-miR-3151-5p 1 0 0
chr19:47742427|47742734 hsa-miR-3180-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6748-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6772-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6793-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6796-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6732-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6805-5p 1 0 0
chr19:47742427|47742734 hsa-miR-23a-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6798-5p 1 0 0
chr19:47742427|47742734 hsa-miR-486-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6881-5p 1 0 0
chr19:47742427|47742734 hsa-miR-615-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6786-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4786-3p 1 0 0
chr19:47742427|47742734 hsa-miR-1229-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4640-5p 1 0 0
chr19:47742427|47742734 hsa-miR-3691-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6771-5p 1 0 0
chr19:47742427|47742734 hsa-miR-92b-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4713-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6749-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4743-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4787-5p 1 0 0
chr19:47742427|47742734 hsa-miR-149-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6781-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6499-5p 1 0 0
chr19:47742427|47742734 hsa-miR-3619-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6801-5p 1 0 0
chr19:47742427|47742734 hsa-miR-1233-5p 1 0 0
chr19:47742427|47742734 hsa-miR-1273h-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4763-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6769b-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6778-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6787-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6816-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6893-5p 1 0 0
chr19:47742427|47742734 hsa-miR-1343-5p 1 0 0
chr19:47742427|47742734 hsa-miR-3180 1 0 0
chr19:47742427|47742734 hsa-miR-6743-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6752-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6754-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6756-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6803-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6819-5p 1 0 0
chr19:47742427|47742734 hsa-miR-1249-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6751-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6763-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6779-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6797-5p 1 0 0
chr19:47742427|47742734 hsa-miR-7111-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4728-5p 1 0 0
chr19:47742427|47742734 hsa-miR-10396b-5p 1 0 0
chr19:47742427|47742734 hsa-miR-10526-3p 1 0 0
chr19:47742427|47742734 hsa-miR-1237-5p 1 0 0
chr19:47742427|47742734 hsa-miR-328-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4649-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4685-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4701-3p 1 0 0
chr19:47742427|47742734 hsa-miR-4726-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6729-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6735-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6794-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6795-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6846-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6848-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6887-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4697-5p 1 0 0
chr19:47742427|47742734 hsa-miR-4723-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6845-5p 1 0 0
chr19:47742427|47742734 hsa-miR-6885-5p 1 0 0
chr19:47742427|47742734 hsa-miR-1271-3p 1 0 0
chr19:47742427|47742734 hsa-miR-541-3p 1 0 0
chr19:47742427|47742734 hsa-miR-6762-5p 1 0 0
chr19:47742427|47742734 hsa-miR-769-3p 1 0 0
chr19:47742427|47742734 hsa-miR-9851-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:47742427|47742734
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MLARLVSNSASQVICSPWPPKVMGLQA
Nucleotide Sequence ATGTTGGCCAGGCTGGTCTCGAACTCCGCATCTCAGGTGATCTGCTCGCCTTGGCCTCCCAAAGTGATGGGATTACAGGCATGA
CircID chr19:47742427|47742734
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MILCPLGDISVLHPRVCGWNCPACSWPPGSLPT
Nucleotide Sequence CTGATACTGTGCCCCCTTGGAGATATTTCCGTCCTCCACCCACGTGTCTGTGGCTGGAACTGCCCAGCCTGCTCCTGGCCCCCTGGAAGCCTCCCCACA
CircID chr19:47742427|47742734
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MLALASQSDGITGMSHRARLHTHFFKKDPVAGRKAPSILLL
Nucleotide Sequence CTGCTCGCCTTGGCCTCCCAAAGTGATGGGATTACAGGCATGAGCCACCGTGCCCGGCTTCACACCCATTTCTTTAAAAAGGATCCCGTAGCAGGCAGAAAAGCCCCTTCCATCCTGCTCCTCTGA
CircID chr19:47742427|47742734
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MEIFPSSTHVSVAGTAQPAPGPLEASPQ
Nucleotide Sequence TTGGAGATATTTCCGTCCTCCACCCACGTGTCTGTGGCTGGAACTGCCCAGCCTGCTCCTGGCCCCCTGGAAGCCTCCCCACAG
CircID chr19:47742427|47742734
ORF Type ORF5
Protein Length 76
Nucleotide Length 231
Protein Sequence LWGGFQGARSRLGSSSHRHVGGGRKYLQGGTVSEEQDGRGFSACYGILFKEMGVKPGTVAHACNPITLGGQGEQIT
Nucleotide Sequence CTGTGGGGAGGCTTCCAGGGGGCCAGGAGCAGGCTGGGCAGTTCCAGCCACAGACACGTGGGTGGAGGACGGAAATATCTCCAAGGGGGCACAGTATCAGAGGAGCAGGATGGAAGGGGCTTTTCTGCCTGCTACGGGATCCTTTTTAAAGAAATGGGTGTGAAGCCGGGCACGGTGGCTCATGCCTGTAATCCCATCACTTTGGGAGGCCAAGGCGAGCAGATCACCTGA
CircID chr19:47742427|47742734
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence MPVIPSLWEAKASRSPEMRSSRPAWPTW
Nucleotide Sequence ATGCCTGTAATCCCATCACTTTGGGAGGCCAAGGCGAGCAGATCACCTGAGATGCGGAGTTCGAGACCAGCCTGGCCAACATGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab