CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48337899|48338152
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ATTGGGTTTGTGTCAGTATCTGCCAAGCCGATGGAGCTGAATTCTAGTTAAAGGAGCAGGTCACTCTGTGGCACACAGATGAAGCCAGAGTCTCCCTGGAGAGGGGTCCCCCTGCCACCCGGAGGGTCCCTTCAGCACTACCGCTGCCCACAAGGAATACAGCACTCGCTCCTCCTACCCTGGGGTCTATGTCTTGGGCAGCCCCTCCACCTACTCAGTCACAGGCCAGGCCCCTGGCACCATCCTTGCTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48337899|48338152 hsa-miR-134-5p 0 0 1
chr19:48337899|48338152 hsa-miR-134-3p 0 0 1
chr19:48337899|48338152 hsa-miR-149-5p 0 0 1
chr19:48337899|48338152 hsa-miR-149-3p 0 0 1
chr19:48337899|48338152 hsa-miR-376c-5p 0 0 1
chr19:48337899|48338152 hsa-miR-376c-3p 0 0 1
chr19:48337899|48338152 hsa-miR-520f-5p 0 0 1
chr19:48337899|48338152 hsa-miR-520f-3p 0 0 1
chr19:48337899|48338152 hsa-miR-630 0 0 1
chr19:48337899|48338152 hsa-miR-631 0 0 1
chr19:48337899|48338152 hsa-miR-641 0 1 1
chr19:48337899|48338152 hsa-miR-766-5p 0 0 1
chr19:48337899|48338152 hsa-miR-766-3p 0 0 1
chr19:48337899|48338152 hsa-miR-765 0 0 1
chr19:48337899|48338152 hsa-miR-939-5p 0 0 1
chr19:48337899|48338152 hsa-miR-939-3p 0 0 1
chr19:48337899|48338152 hsa-miR-1227-5p 0 0 1
chr19:48337899|48338152 hsa-miR-1227-3p 0 0 1
chr19:48337899|48338152 hsa-miR-512-3p 0 0 1
chr19:48337899|48338152 hsa-miR-885-3p 0 1 1
chr19:48337899|48338152 hsa-miR-423-5p 0 0 1
chr19:48337899|48338152 hsa-miR-502-5p 0 0 1
chr19:48337899|48338152 hsa-miR-1207-5p 0 0 1
chr19:48337899|48338152 hsa-miR-608 1 1 0
chr19:48337899|48338152 hsa-miR-663a 1 0 0
chr19:48337899|48338152 hsa-miR-762 1 0 0
chr19:48337899|48338152 hsa-miR-1268a 1 0 0
chr19:48337899|48338152 hsa-miR-2861 1 1 0
chr19:48337899|48338152 hsa-miR-3176 0 1 0
chr19:48337899|48338152 hsa-miR-4322 0 1 0
chr19:48337899|48338152 hsa-miR-3935 0 1 0
chr19:48337899|48338152 hsa-miR-1268b 1 0 0
chr19:48337899|48338152 hsa-miR-4439 0 1 0
chr19:48337899|48338152 hsa-miR-4448 0 1 0
chr19:48337899|48338152 hsa-miR-4467 0 1 0
chr19:48337899|48338152 hsa-miR-4513 1 0 0
chr19:48337899|48338152 hsa-miR-3960 1 0 0
chr19:48337899|48338152 hsa-miR-4656 1 0 0
chr19:48337899|48338152 hsa-miR-4675 1 0 0
chr19:48337899|48338152 hsa-miR-4706 1 0 0
chr19:48337899|48338152 hsa-miR-4739 1 0 0
chr19:48337899|48338152 hsa-miR-4741 1 0 0
chr19:48337899|48338152 hsa-miR-5698 1 0 0
chr19:48337899|48338152 hsa-miR-6069 1 0 0
chr19:48337899|48338152 hsa-miR-6081 1 0 0
chr19:48337899|48338152 hsa-miR-6090 1 0 0
chr19:48337899|48338152 hsa-miR-7150 0 1 0
chr19:48337899|48338152 hsa-miR-12114 0 1 0
chr19:48337899|48338152 hsa-miR-29b-1-5p 0 1 0
chr19:48337899|48338152 hsa-miR-128-1-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6861-5p 1 1 0
chr19:48337899|48338152 hsa-miR-6515-5p 0 1 0
chr19:48337899|48338152 hsa-miR-197-5p 1 0 0
chr19:48337899|48338152 hsa-miR-1915-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6798-5p 1 0 0
chr19:48337899|48338152 hsa-miR-5006-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6735-3p 1 1 0
chr19:48337899|48338152 hsa-miR-6786-5p 1 0 0
chr19:48337899|48338152 hsa-miR-1229-5p 1 1 0
chr19:48337899|48338152 hsa-miR-4783-3p 1 0 0
chr19:48337899|48338152 hsa-miR-4640-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6823-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6749-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6789-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6802-5p 0 1 0
chr19:48337899|48338152 hsa-miR-6864-5p 0 1 0
chr19:48337899|48338152 hsa-miR-6869-5p 0 1 0
chr19:48337899|48338152 hsa-miR-4707-5p 1 0 0
chr19:48337899|48338152 hsa-miR-4742-3p 0 1 0
chr19:48337899|48338152 hsa-miR-7113-5p 1 1 0
chr19:48337899|48338152 hsa-miR-4763-3p 1 1 0
chr19:48337899|48338152 hsa-miR-6769b-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6787-5p 1 0 0
chr19:48337899|48338152 hsa-miR-1343-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6726-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6743-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6754-5p 1 1 0
chr19:48337899|48338152 hsa-miR-6756-5p 1 0 0
chr19:48337899|48338152 hsa-miR-7107-5p 1 0 0
chr19:48337899|48338152 hsa-miR-1249-5p 1 0 0
chr19:48337899|48338152 hsa-miR-1915-3p 1 1 0
chr19:48337899|48338152 hsa-miR-1909-3p 1 0 0
chr19:48337899|48338152 hsa-miR-328-5p 1 1 0
chr19:48337899|48338152 hsa-miR-4632-5p 1 0 0
chr19:48337899|48338152 hsa-miR-4685-5p 1 0 0
chr19:48337899|48338152 hsa-miR-4745-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6794-5p 0 1 0
chr19:48337899|48338152 hsa-miR-6846-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6848-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6889-5p 1 0 0
chr19:48337899|48338152 hsa-miR-3187-5p 1 1 0
chr19:48337899|48338152 hsa-miR-6885-5p 0 1 0
chr19:48337899|48338152 hsa-miR-1238-5p 1 0 0
chr19:48337899|48338152 hsa-miR-4758-5p 1 0 0
chr19:48337899|48338152 hsa-miR-5586-3p 0 1 0
chr19:48337899|48338152 hsa-miR-3085-5p 1 0 0
chr19:48337899|48338152 hsa-miR-3184-5p 0 1 0
chr19:48337899|48338152 hsa-miR-6753-3p 1 0 0
chr19:48337899|48338152 hsa-miR-6762-5p 1 0 0
chr19:48337899|48338152 hsa-miR-6764-5p 0 1 0
chr19:48337899|48338152 hsa-miR-3617-5p 0 1 0
chr19:48337899|48338152 hsa-miR-3136-5p 0 1 0
chr19:48337899|48338152 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:48337899|48338152
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MKPESPWRGVPLPPGGSLQHYRCPQGIQHSLLLPWGLCLGQPLHLLSHRPGPWHHPCS
Nucleotide Sequence ATGAAGCCAGAGTCTCCCTGGAGAGGGGTCCCCCTGCCACCCGGAGGGTCCCTTCAGCACTACCGCTGCCCACAAGGAATACAGCACTCGCTCCTCCTACCCTGGGGTCTATGTCTTGGGCAGCCCCTCCACCTACTCAGTCACAGGCCAGGCCCCTGGCACCATCCTTGCTCC
CircID chr19:48337899|48338152
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MWHTDEARVSLERGPPATRRVPSALPLPTRNTALAPPTLGSMSWAAPPPTQSQARPLAPSLLP
Nucleotide Sequence CTGTGGCACACAGATGAAGCCAGAGTCTCCCTGGAGAGGGGTCCCCCTGCCACCCGGAGGGTCCCTTCAGCACTACCGCTGCCCACAAGGAATACAGCACTCGCTCCTCCTACCCTGGGGTCTATGTCTTGGGCAGCCCCTCCACCTACTCAGTCACAGGCCAGGCCCCTGGCACCATCCTTGCTCCCC
CircID chr19:48337899|48338152
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MSRWRGCPRHRPQGRRSECCIPCGQR
Nucleotide Sequence CTGAGTAGGTGGAGGGGCTGCCCAAGACATAGACCCCAGGGTAGGAGGAGCGAGTGCTGTATTCCTTGTGGGCAGCGGTAG
CircID chr19:48337899|48338152
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MYSLWAAVVLKGPSGWQGDPSPGRLWLHLCATE
Nucleotide Sequence CTGTATTCCTTGTGGGCAGCGGTAGTGCTGAAGGGACCCTCCGGGTGGCAGGGGGACCCCTCTCCAGGGAGACTCTGGCTTCATCTGTGTGCCACAGAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab