CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48453646|48453857
Strand +
CircType exon
Host Gene ENSG00000105447.11;
Algorism CIRI2;
Sequence CTTCCTCCCGACACAGCACCAGCCTCTAAAGTCAGGGAGGAGGGGAGAGGGTCGCATGTAGCCCCCACACGGAGAAATCCTGGCCAAACCCAGCTGGCAGGAAGACAACGGGCAGAAGCAAATTGTGTTGGAGGAACCCACACCTCCAATTTGGTGCAGCCACTGTATATCCCCCGAGTCCCCTGCTGGGAACCAGCAGCCAAAACTGGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48453646|48453857 hsa-miR-214-5p 0 0 1
chr19:48453646|48453857 hsa-miR-214-3p 0 0 1
chr19:48453646|48453857 hsa-miR-221-5p 0 0 1
chr19:48453646|48453857 hsa-miR-221-3p 0 0 1
chr19:48453646|48453857 hsa-miR-222-5p 0 0 1
chr19:48453646|48453857 hsa-miR-222-3p 0 0 1
chr19:48453646|48453857 hsa-miR-511-5p 0 0 1
chr19:48453646|48453857 hsa-miR-511-3p 0 0 1
chr19:48453646|48453857 hsa-miR-588 0 0 1
chr19:48453646|48453857 hsa-miR-604 0 0 1
chr19:48453646|48453857 hsa-miR-629-5p 0 0 1
chr19:48453646|48453857 hsa-miR-629-3p 0 0 1
chr19:48453646|48453857 hsa-miR-647 0 1 1
chr19:48453646|48453857 hsa-miR-877-5p 0 0 1
chr19:48453646|48453857 hsa-miR-877-3p 0 0 1
chr19:48453646|48453857 hsa-miR-1202 1 1 1
chr19:48453646|48453857 hsa-miR-1303 0 0 1
chr19:48453646|48453857 hsa-miR-491-5p 0 0 1
chr19:48453646|48453857 hsa-miR-767-5p 0 0 1
chr19:48453646|48453857 hsa-miR-485-5p 0 1 1
chr19:48453646|48453857 hsa-miR-1207-3p 0 0 1
chr19:48453646|48453857 hsa-miR-324-3p 0 0 1
chr19:48453646|48453857 hsa-miR-125a-5p 0 0 1
chr19:48453646|48453857 hsa-miR-876-5p 0 1 1
chr19:48453646|48453857 hsa-miR-125b 0 0 1
chr19:48453646|48453857 hsa-miR-138 0 0 1
chr19:48453646|48453857 hsa-miR-768-5p 0 0 1
chr19:48453646|48453857 hsa-miR-346 1 0 0
chr19:48453646|48453857 hsa-miR-623 1 0 0
chr19:48453646|48453857 hsa-miR-4447 0 1 0
chr19:48453646|48453857 hsa-miR-4525 1 1 0
chr19:48453646|48453857 hsa-miR-1587 1 0 0
chr19:48453646|48453857 hsa-miR-3972 0 1 0
chr19:48453646|48453857 hsa-miR-4748 0 1 0
chr19:48453646|48453857 hsa-miR-5698 1 0 0
chr19:48453646|48453857 hsa-miR-138-5p 0 1 0
chr19:48453646|48453857 hsa-miR-4687-3p 1 0 0
chr19:48453646|48453857 hsa-miR-6892-3p 0 1 0
chr19:48453646|48453857 hsa-miR-6510-5p 0 1 0
chr19:48453646|48453857 hsa-miR-3692-5p 0 1 0
chr19:48453646|48453857 hsa-miR-6875-3p 1 0 0
chr19:48453646|48453857 hsa-miR-23b-5p 0 1 0
chr19:48453646|48453857 hsa-miR-7110-3p 1 1 0
chr19:48453646|48453857 hsa-miR-3130-3p 0 1 0
chr19:48453646|48453857 hsa-miR-345-3p 1 0 0
chr19:48453646|48453857 hsa-miR-6835-5p 1 1 0
chr19:48453646|48453857 hsa-miR-4640-5p 1 0 0
chr19:48453646|48453857 hsa-miR-7111-3p 1 1 0
chr19:48453646|48453857 hsa-miR-4787-5p 1 0 0
chr19:48453646|48453857 hsa-miR-5010-5p 0 1 0
chr19:48453646|48453857 hsa-miR-6866-5p 0 1 0
chr19:48453646|48453857 hsa-miR-3605-3p 1 0 0
chr19:48453646|48453857 hsa-miR-6826-3p 0 1 0
chr19:48453646|48453857 hsa-miR-6886-3p 1 0 0
chr19:48453646|48453857 hsa-miR-6738-3p 0 1 0
chr19:48453646|48453857 hsa-miR-6722-3p 0 1 0
chr19:48453646|48453857 hsa-miR-4685-3p 1 1 0
chr19:48453646|48453857 hsa-miR-1909-3p 1 1 0
chr19:48453646|48453857 hsa-miR-4745-5p 1 0 0
chr19:48453646|48453857 hsa-miR-6777-5p 1 0 0
chr19:48453646|48453857 hsa-miR-6846-5p 0 1 0
chr19:48453646|48453857 hsa-miR-6848-5p 1 1 0
chr19:48453646|48453857 hsa-miR-3689d 0 1 0
chr19:48453646|48453857 hsa-miR-4722-3p 0 1 0
chr19:48453646|48453857 hsa-miR-6756-3p 1 0 0
chr19:48453646|48453857 hsa-miR-6775-3p 1 0 0
chr19:48453646|48453857 hsa-miR-4723-3p 0 1 0
chr19:48453646|48453857 hsa-miR-483-3p 1 0 0
chr19:48453646|48453857 hsa-miR-6823-3p 1 0 0
chr19:48453646|48453857 hsa-miR-4691-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:48453646|48453857
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MAGRQRAEANCVGGTHTSNLVQPLYIPRVPCWEPAAKTG
Nucleotide Sequence CTGGCAGGAAGACAACGGGCAGAAGCAAATTGTGTTGGAGGAACCCACACCTCCAATTTGGTGCAGCCACTGTATATCCCCCGAGTCCCCTGCTGGGAACCAGCAGCCAAAACTGGG
CircID chr19:48453646|48453857
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MAKPSWQEDNGQKQIVLEEPTPPIWCSHCISPESPAGNQQPKLG
Nucleotide Sequence CTGGCCAAACCCAGCTGGCAGGAAGACAACGGGCAGAAGCAAATTGTGTTGGAGGAACCCACACCTCCAATTTGGTGCAGCCACTGTATATCCCCCGAGTCCCCTGCTGGGAACCAGCAGCCAAAACTGGGT
CircID chr19:48453646|48453857
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MCWRNPHLQFGAATVYPPSPLLGTSSQNWV
Nucleotide Sequence TTGTGTTGGAGGAACCCACACCTCCAATTTGGTGCAGCCACTGTATATCCCCCGAGTCCCCTGCTGGGAACCAGCAGCCAAAACTGGGTC
CircID chr19:48453646|48453857
ORF Type ORF4
Protein Length 67
Nucleotide Length 201
Protein Sequence MAAGSQQGTRGIYSGCTKLEVWVPPTQFASARCLPASWVWPGFLRVGATCDPLPSSLTLEAGAVSGG
Nucleotide Sequence TTGGCTGCTGGTTCCCAGCAGGGGACTCGGGGGATATACAGTGGCTGCACCAAATTGGAGGTGTGGGTTCCTCCAACACAATTTGCTTCTGCCCGTTGTCTTCCTGCCAGCTGGGTTTGGCCAGGATTTCTCCGTGTGGGGGCTACATGCGACCCTCTCCCCTCCTCCCTGACTTTAGAGGCTGGTGCTGTGTCGGGAGGA
CircID chr19:48453646|48453857
ORF Type ORF5
Protein Length 55
Nucleotide Length 168
Protein Sequence MLVPSRGLGGYTVAAPNWRCGFLQHNLLLPVVFLPAGFGQDFSVWGLHATLSPPP
Nucleotide Sequence CTGCTGGTTCCCAGCAGGGGACTCGGGGGATATACAGTGGCTGCACCAAATTGGAGGTGTGGGTTCCTCCAACACAATTTGCTTCTGCCCGTTGTCTTCCTGCCAGCTGGGTTTGGCCAGGATTTCTCCGTGTGGGGGCTACATGCGACCCTCTCCCCTCCTCCCTGA
CircID chr19:48453646|48453857
ORF Type ORF6
Protein Length 53
Nucleotide Length 159
Protein Sequence MHQIGGVGSSNTICFCPLSSCQLGLARISPCGGYMRPSPLLPDFRGWCCVGRK
Nucleotide Sequence CTGCACCAAATTGGAGGTGTGGGTTCCTCCAACACAATTTGCTTCTGCCCGTTGTCTTCCTGCCAGCTGGGTTTGGCCAGGATTTCTCCGTGTGGGGGCTACATGCGACCCTCTCCCCTCCTCCCTGACTTTAGAGGCTGGTGCTGTGTCGGGAGGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab