CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48673316|48673457
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCTGCCCACTGGCTCAGCCCCGCCTTGTGGTGGCCGCCATCGCGATCGGGCAGGGGCTGACCTTTGGGAGACAATCGCTGTTGGAAACTTTGCTCAGCCCCTGCCTCTGGCTGCGTGACCCCAAGCCAGCCCCTCCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48673316|48673457 hsa-miR-150-5p 0 0 1
chr19:48673316|48673457 hsa-miR-150-3p 0 0 1
chr19:48673316|48673457 hsa-miR-561-5p 0 0 1
chr19:48673316|48673457 hsa-miR-561-3p 0 0 1
chr19:48673316|48673457 hsa-miR-575 0 1 1
chr19:48673316|48673457 hsa-miR-765 0 0 1
chr19:48673316|48673457 hsa-miR-744-5p 0 0 1
chr19:48673316|48673457 hsa-miR-744-3p 0 0 1
chr19:48673316|48673457 hsa-miR-940 0 0 1
chr19:48673316|48673457 hsa-miR-1827 0 0 1
chr19:48673316|48673457 hsa-miR-532-3p 0 0 1
chr19:48673316|48673457 hsa-miR-615-5p 0 0 1
chr19:48673316|48673457 hsa-miR-423-5p 0 0 1
chr19:48673316|48673457 hsa-miR-1207-5p 1 1 1
chr19:48673316|48673457 hsa-miR-663 0 0 1
chr19:48673316|48673457 hsa-miR-219-5p 0 0 1
chr19:48673316|48673457 hsa-miR-612 1 1 0
chr19:48673316|48673457 hsa-miR-663a 0 1 0
chr19:48673316|48673457 hsa-miR-762 1 1 0
chr19:48673316|48673457 hsa-miR-4257 1 1 0
chr19:48673316|48673457 hsa-miR-4498 1 1 0
chr19:48673316|48673457 hsa-miR-4507 1 0 0
chr19:48673316|48673457 hsa-miR-4508 1 1 0
chr19:48673316|48673457 hsa-miR-1587 1 1 0
chr19:48673316|48673457 hsa-miR-3960 1 0 0
chr19:48673316|48673457 hsa-miR-4651 1 0 0
chr19:48673316|48673457 hsa-miR-4656 1 1 0
chr19:48673316|48673457 hsa-miR-4663 0 1 0
chr19:48673316|48673457 hsa-miR-4741 1 0 0
chr19:48673316|48673457 hsa-miR-5194 1 0 0
chr19:48673316|48673457 hsa-miR-5787 1 0 0
chr19:48673316|48673457 hsa-miR-6085 1 1 0
chr19:48673316|48673457 hsa-miR-6086 1 0 0
chr19:48673316|48673457 hsa-miR-6133 1 0 0
chr19:48673316|48673457 hsa-miR-7150 1 0 0
chr19:48673316|48673457 hsa-miR-8072 1 0 0
chr19:48673316|48673457 hsa-miR-8077 0 1 0
chr19:48673316|48673457 hsa-miR-4433b-3p 1 0 0
chr19:48673316|48673457 hsa-miR-6765-5p 1 0 0
chr19:48673316|48673457 hsa-miR-7106-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6894-5p 1 0 0
chr19:48673316|48673457 hsa-miR-210-5p 0 1 0
chr19:48673316|48673457 hsa-miR-6510-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6089 1 0 0
chr19:48673316|48673457 hsa-miR-6807-5p 0 1 0
chr19:48673316|48673457 hsa-miR-4695-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6721-5p 1 1 0
chr19:48673316|48673457 hsa-miR-3180-3p 1 0 0
chr19:48673316|48673457 hsa-miR-185-3p 1 1 0
chr19:48673316|48673457 hsa-miR-6829-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6732-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6798-5p 1 0 0
chr19:48673316|48673457 hsa-miR-1908-5p 1 1 0
chr19:48673316|48673457 hsa-miR-149-3p 1 0 0
chr19:48673316|48673457 hsa-miR-6769a-3p 0 1 0
chr19:48673316|48673457 hsa-miR-7112-5p 1 0 0
chr19:48673316|48673457 hsa-let-7e-5p 1 0 0
chr19:48673316|48673457 hsa-miR-629-3p 0 1 0
chr19:48673316|48673457 hsa-miR-6814-5p 0 1 0
chr19:48673316|48673457 hsa-miR-2277-5p 1 0 0
chr19:48673316|48673457 hsa-miR-4709-5p 0 1 0
chr19:48673316|48673457 hsa-miR-10400-5p 1 0 0
chr19:48673316|48673457 hsa-miR-1233-5p 1 0 0
chr19:48673316|48673457 hsa-miR-4763-3p 1 1 0
chr19:48673316|48673457 hsa-miR-6778-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6787-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6893-5p 1 1 0
chr19:48673316|48673457 hsa-miR-5001-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6743-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6756-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6813-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6851-5p 1 0 0
chr19:48673316|48673457 hsa-miR-11181-3p 1 0 0
chr19:48673316|48673457 hsa-miR-1249-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6722-3p 1 1 0
chr19:48673316|48673457 hsa-miR-6779-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6797-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6808-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6879-5p 1 0 0
chr19:48673316|48673457 hsa-miR-186-3p 0 1 0
chr19:48673316|48673457 hsa-miR-3620-5p 1 1 0
chr19:48673316|48673457 hsa-miR-4728-5p 1 0 0
chr19:48673316|48673457 hsa-miR-10396a-5p 1 1 0
chr19:48673316|48673457 hsa-miR-10396b-5p 1 1 0
chr19:48673316|48673457 hsa-miR-1237-5p 1 0 0
chr19:48673316|48673457 hsa-miR-1909-3p 1 1 0
chr19:48673316|48673457 hsa-miR-328-5p 1 0 0
chr19:48673316|48673457 hsa-miR-4649-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6729-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6738-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6846-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6848-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6858-5p 1 1 0
chr19:48673316|48673457 hsa-miR-6885-5p 1 0 0
chr19:48673316|48673457 hsa-miR-939-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6511a-5p 1 0 0
chr19:48673316|48673457 hsa-miR-6511b-5p 1 0 0
chr19:48673316|48673457 hsa-miR-1914-3p 1 0 0
chr19:48673316|48673457 hsa-miR-6810-3p 0 1 0
chr19:48673316|48673457 hsa-miR-4676-5p 0 1 0
chr19:48673316|48673457 hsa-miR-6766-3p 0 1 0
chr19:48673316|48673457 hsa-miR-4782-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:48673316|48673457
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MAQPRLVVAAIAIGQGLTFGRQSLLETLLSPCLWLRDPKPAPPP
Nucleotide Sequence CTGGCTCAGCCCCGCCTTGTGGTGGCCGCCATCGCGATCGGGCAGGGGCTGACCTTTGGGAGACAATCGCTGTTGGAAACTTTGCTCAGCCCCTGCCTCTGGCTGCGTGACCCCAAGCCAGCCCCTCCTCCT
CircID chr19:48673316|48673457
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MGDNRCWKLCSAPASGCVTPSQPLLL
Nucleotide Sequence TTGGGAGACAATCGCTGTTGGAAACTTTGCTCAGCCCCTGCCTCTGGCTGCGTGACCCCAAGCCAGCCCCTCCTCCTC
CircID chr19:48673316|48673457
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence LPTGSAPPCGGRHRDRAGADLWETIAVGNFAQPLPLAA
Nucleotide Sequence CTGCCCACTGGCTCAGCCCCGCCTTGTGGTGGCCGCCATCGCGATCGGGCAGGGGCTGACCTTTGGGAGACAATCGCTGTTGGAAACTTTGCTCAGCCCCTGCCTCTGGCTGCGTGA
CircID chr19:48673316|48673457
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MSPKGQPLPDRDGGHHKAGLSQWAG
Nucleotide Sequence TTGTCTCCCAAAGGTCAGCCCCTGCCCGATCGCGATGGCGGCCACCACAAGGCGGGGCTGAGCCAGTGGGCAGGG
CircID chr19:48673316|48673457
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MGSRSQRQGLSKVSNSDCLPKVSPCPIAMAATTRRG
Nucleotide Sequence TTGGGGTCACGCAGCCAGAGGCAGGGGCTGAGCAAAGTTTCCAACAGCGATTGTCTCCCAAAGGTCAGCCCCTGCCCGATCGCGATGGCGGCCACCACAAGGCGGGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab