CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48727041|48727430
Strand -
CircType exon
Host Gene ENSG00000105538.7;
Algorism CIRI2;
Sequence CTTCTCCTGCACAAAGCTAAGCAGCTCCGTGGTGTTGGCCATCCACAGCATGAGTGGCCGCAGCTCCACAGACACAGCTTCAGGAGTCAGGGGCACCTCGGGGACCCCCTCAGGGTGGCTTGAAAAAGAGGAAGGAATTTGTGATCCCTGCCCAACCCTCATCATAGTTTACAAACCCCAAGATCTAAGTCTAAGTGGGAGAGCAAGACCAACTCCCATTGCGCAGCTGGAAAAGTTGAGCGCAAGGAGAAGCAGAAACTTGCACTGGGGCATGCATGGGGTGAACACAGAACTAGACGCAAAACCCAACCCCTGCATCCCTCCAGACCACTCTGCTCAGAATTTCTCTTACTTTTCTGGCTGACGGTCTCCAATTTCCTTAATCTTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48727041|48727430 hsa-miR-30a-5p 0 0 1
chr19:48727041|48727430 hsa-miR-30a-3p 0 0 1
chr19:48727041|48727430 hsa-miR-148a-5p 0 0 1
chr19:48727041|48727430 hsa-miR-148a-3p 0 0 1
chr19:48727041|48727430 hsa-miR-30d-5p 0 0 1
chr19:48727041|48727430 hsa-miR-30d-3p 0 0 1
chr19:48727041|48727430 hsa-miR-30b-5p 0 0 1
chr19:48727041|48727430 hsa-miR-30b-3p 0 0 1
chr19:48727041|48727430 hsa-miR-130a-5p 0 0 1
chr19:48727041|48727430 hsa-miR-130a-3p 0 0 1
chr19:48727041|48727430 hsa-miR-152-5p 0 0 1
chr19:48727041|48727430 hsa-miR-152-3p 0 0 1
chr19:48727041|48727430 hsa-miR-150-5p 0 0 1
chr19:48727041|48727430 hsa-miR-150-3p 0 0 1
chr19:48727041|48727430 hsa-miR-301a-5p 0 0 1
chr19:48727041|48727430 hsa-miR-301a-3p 0 0 1
chr19:48727041|48727430 hsa-miR-130b-5p 0 0 1
chr19:48727041|48727430 hsa-miR-130b-3p 0 0 1
chr19:48727041|48727430 hsa-miR-30e-5p 0 0 1
chr19:48727041|48727430 hsa-miR-30e-3p 0 0 1
chr19:48727041|48727430 hsa-miR-148b-5p 0 0 1
chr19:48727041|48727430 hsa-miR-148b-3p 0 0 1
chr19:48727041|48727430 hsa-miR-345-5p 0 0 1
chr19:48727041|48727430 hsa-miR-345-3p 0 0 1
chr19:48727041|48727430 hsa-miR-431-5p 0 0 1
chr19:48727041|48727430 hsa-miR-431-3p 0 0 1
chr19:48727041|48727430 hsa-miR-498-5p 0 0 1
chr19:48727041|48727430 hsa-miR-498-3p 0 0 1
chr19:48727041|48727430 hsa-miR-539-5p 0 0 1
chr19:48727041|48727430 hsa-miR-539-3p 0 0 1
chr19:48727041|48727430 hsa-miR-558 0 0 1
chr19:48727041|48727430 hsa-miR-559 0 0 1
chr19:48727041|48727430 hsa-miR-571 0 0 1
chr19:48727041|48727430 hsa-miR-620 0 0 1
chr19:48727041|48727430 hsa-miR-629-5p 0 0 1
chr19:48727041|48727430 hsa-miR-629-3p 0 0 1
chr19:48727041|48727430 hsa-miR-635 0 0 1
chr19:48727041|48727430 hsa-miR-454-5p 0 0 1
chr19:48727041|48727430 hsa-miR-454-3p 0 0 1
chr19:48727041|48727430 hsa-miR-301b-5p 0 0 1
chr19:48727041|48727430 hsa-miR-301b-3p 0 0 1
chr19:48727041|48727430 hsa-miR-548j-5p 0 0 1
chr19:48727041|48727430 hsa-miR-548j-3p 0 0 1
chr19:48727041|48727430 hsa-miR-1286 0 0 1
chr19:48727041|48727430 hsa-miR-1305 0 0 1
chr19:48727041|48727430 hsa-miR-548n 0 0 1
chr19:48727041|48727430 hsa-miR-1270 0 0 1
chr19:48727041|48727430 hsa-miR-1272 0 0 1
chr19:48727041|48727430 hsa-miR-1322 0 0 1
chr19:48727041|48727430 hsa-miR-1825 0 0 1
chr19:48727041|48727430 hsa-miR-127-5p 0 0 1
chr19:48727041|48727430 hsa-miR-532-3p 0 0 1
chr19:48727041|48727430 hsa-miR-615-5p 1 0 1
chr19:48727041|48727430 hsa-miR-296-3p 1 0 1
chr19:48727041|48727430 hsa-miR-423-5p 0 0 1
chr19:48727041|48727430 hsa-miR-502-5p 0 0 1
chr19:48727041|48727430 hsa-miR-1207-5p 1 0 1
chr19:48727041|48727430 hsa-miR-125a-5p 0 0 1
chr19:48727041|48727430 hsa-miR-548b-5p 0 0 1
chr19:48727041|48727430 hsa-miR-548d-5p 0 0 1
chr19:48727041|48727430 hsa-miR-548c-5p 0 0 1
chr19:48727041|48727430 hsa-miR-548a-5p 0 0 1
chr19:48727041|48727430 hsa-miR-548i 0 0 1
chr19:48727041|48727430 hsa-miR-125b 0 0 1
chr19:48727041|48727430 hsa-miR-30c 0 0 1
chr19:48727041|48727430 hsa-miR-516b 0 0 1
chr19:48727041|48727430 hsa-miR-544 0 0 1
chr19:48727041|48727430 hsa-miR-450a 0 0 1
chr19:48727041|48727430 hsa-miR-151-3p 0 0 1
chr19:48727041|48727430 hsa-miR-548h 0 0 1
chr19:48727041|48727430 hsa-miR-612 1 0 0
chr19:48727041|48727430 hsa-miR-638 1 0 0
chr19:48727041|48727430 hsa-miR-663a 1 0 0
chr19:48727041|48727430 hsa-miR-762 1 0 0
chr19:48727041|48727430 hsa-miR-4466 1 0 0
chr19:48727041|48727430 hsa-miR-4507 1 0 0
chr19:48727041|48727430 hsa-miR-4767 1 0 0
chr19:48727041|48727430 hsa-miR-5572 1 0 0
chr19:48727041|48727430 hsa-miR-5681b 1 0 0
chr19:48727041|48727430 hsa-miR-6860 1 0 0
chr19:48727041|48727430 hsa-miR-6857-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6721-5p 1 0 0
chr19:48727041|48727430 hsa-miR-3151-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6782-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6772-3p 1 0 0
chr19:48727041|48727430 hsa-miR-1229-5p 1 0 0
chr19:48727041|48727430 hsa-miR-5010-3p 1 0 0
chr19:48727041|48727430 hsa-miR-1228-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6823-5p 1 0 0
chr19:48727041|48727430 hsa-miR-7112-5p 1 0 0
chr19:48727041|48727430 hsa-miR-1225-5p 1 0 0
chr19:48727041|48727430 hsa-miR-503-3p 1 0 0
chr19:48727041|48727430 hsa-miR-4763-3p 1 0 0
chr19:48727041|48727430 hsa-miR-6787-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6812-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6816-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6756-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6803-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6819-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6722-3p 1 0 0
chr19:48727041|48727430 hsa-miR-6751-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6774-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6879-5p 1 0 0
chr19:48727041|48727430 hsa-miR-10396b-5p 1 0 0
chr19:48727041|48727430 hsa-miR-4726-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6848-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6858-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6883-5p 1 0 0
chr19:48727041|48727430 hsa-miR-3940-5p 1 0 0
chr19:48727041|48727430 hsa-miR-6855-5p 1 0 0
chr19:48727041|48727430 hsa-miR-769-3p 1 0 0
chr19:48727041|48727430 hsa-miR-5009-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:48727041|48727430
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MHKAKQLRGVGHPQHEWPQLHRHSFRSQGHLGDPLRVA
Nucleotide Sequence CTGCACAAAGCTAAGCAGCTCCGTGGTGTTGGCCATCCACAGCATGAGTGGCCGCAGCTCCACAGACACAGCTTCAGGAGTCAGGGGCACCTCGGGGACCCCCTCAGGGTGGCTTGA
CircID chr19:48727041|48727430
ORF Type ORF2
Protein Length 81
Nucleotide Length 243
Protein Sequence MPNPHHSLQTPRSKSKWESKTNSHCAAGKVERKEKQKLALGHAWGEHRTRRKTQPLHPSRPLCSEFLLLFWLTVSNFLNLF
Nucleotide Sequence CTGCCCAACCCTCATCATAGTTTACAAACCCCAAGATCTAAGTCTAAGTGGGAGAGCAAGACCAACTCCCATTGCGCAGCTGGAAAAGTTGAGCGCAAGGAGAAGCAGAAACTTGCACTGGGGCATGCATGGGGTGAACACAGAACTAGACGCAAAACCCAACCCCTGCATCCCTCCAGACCACTCTGCTCAGAATTTCTCTTACTTTTCTGGCTGACGGTCTCCAATTTCCTTAATCTTTTC
CircID chr19:48727041|48727430
ORF Type ORF3
Protein Length 109
Nucleotide Length 330
Protein Sequence MAIHSMSGRSSTDTASGVRGTSGTPSGWLEKEEGICDPCPTLIIVYKPQDLSLSGRARPTPIAQLEKLSARRSRNLHWGMHGVNTELDAKPNPCIPPDHSAQNFSYFSG
Nucleotide Sequence TTGGCCATCCACAGCATGAGTGGCCGCAGCTCCACAGACACAGCTTCAGGAGTCAGGGGCACCTCGGGGACCCCCTCAGGGTGGCTTGAAAAAGAGGAAGGAATTTGTGATCCCTGCCCAACCCTCATCATAGTTTACAAACCCCAAGATCTAAGTCTAAGTGGGAGAGCAAGACCAACTCCCATTGCGCAGCTGGAAAAGTTGAGCGCAAGGAGAAGCAGAAACTTGCACTGGGGCATGCATGGGGTGAACACAGAACTAGACGCAAAACCCAACCCCTGCATCCCTCCAGACCACTCTGCTCAGAATTTCTCTTACTTTTCTGGCTGA
CircID chr19:48727041|48727430
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MQGLGFASSSVFTPCMPQCKFLLLLALNFSSCAMGVGLALPLRLRSWGL
Nucleotide Sequence ATGCAGGGGTTGGGTTTTGCGTCTAGTTCTGTGTTCACCCCATGCATGCCCCAGTGCAAGTTTCTGCTTCTCCTTGCGCTCAACTTTTCCAGCTGCGCAATGGGAGTTGGTCTTGCTCTCCCACTTAGACTTAGATCTTGGGGTTTGTAA
CircID chr19:48727041|48727430
ORF Type ORF5
Protein Length 55
Nucleotide Length 165
Protein Sequence MMRVGQGSQIPSSFSSHPEGVPEVPLTPEAVSVELRPLMLWMANTTELLSFVQEK
Nucleotide Sequence ATGATGAGGGTTGGGCAGGGATCACAAATTCCTTCCTCTTTTTCAAGCCACCCTGAGGGGGTCCCCGAGGTGCCCCTGACTCCTGAAGCTGTGTCTGTGGAGCTGCGGCCACTCATGCTGTGGATGGCCAACACCACGGAGCTGCTTAGCTTTGTGCAGGAGAAG
CircID chr19:48727041|48727430
ORF Type ORF6
Protein Length 70
Nucleotide Length 213
Protein Sequence METVSQKSKRNSEQSGLEGCRGWVLRLVLCSPHACPSASFCFSLRSTFPAAQWELVLLSHLDLDLGVCKL
Nucleotide Sequence TTGGAGACCGTCAGCCAGAAAAGTAAGAGAAATTCTGAGCAGAGTGGTCTGGAGGGATGCAGGGGTTGGGTTTTGCGTCTAGTTCTGTGTTCACCCCATGCATGCCCCAGTGCAAGTTTCTGCTTCTCCTTGCGCTCAACTTTTCCAGCTGCGCAATGGGAGTTGGTCTTGCTCTCCCACTTAGACTTAGATCTTGGGGTTTGTAAACTATGA
CircID chr19:48727041|48727430
ORF Type ORF7
Protein Length 27
Nucleotide Length 81
Protein Sequence MKLCLWSCGHSCCGWPTPRSCLALCRR
Nucleotide Sequence CTGAAGCTGTGTCTGTGGAGCTGCGGCCACTCATGCTGTGGATGGCCAACACCACGGAGCTGCTTAGCTTTGTGCAGGAGA
CircID chr19:48727041|48727430
ORF Type ORF8
Protein Length 28
Nucleotide Length 87
Protein Sequence MHAPVQVSASPCAQLFQLRNGSWSCSPT
Nucleotide Sequence ATGCATGCCCCAGTGCAAGTTTCTGCTTCTCCTTGCGCTCAACTTTTCCAGCTGCGCAATGGGAGTTGGTCTTGCTCTCCCACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab