CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48873816|48873970
Strand -
CircType exon
Host Gene ENSG00000087074.7;
Algorism CIRI2;
Sequence GATGAAGAAGCTGTAAAGAAAGAAGCTCACAGAACCTCTACTTCTGCCTTGTCTCCAGGATCCAAGCCCAGCACTTGGGTGTCTTGCCCAGGGGAGGAAGAGAATCAAGCCACGGAGGATAAAAGAACAGAAAGAAGTAAAGGAGCCAGGAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48873816|48873970 hsa-miR-31-5p 0 0 1
chr19:48873816|48873970 hsa-miR-31-3p 0 0 1
chr19:48873816|48873970 hsa-miR-149-5p 0 0 1
chr19:48873816|48873970 hsa-miR-149-3p 0 0 1
chr19:48873816|48873970 hsa-miR-302a-5p 0 0 1
chr19:48873816|48873970 hsa-miR-302a-3p 0 0 1
chr19:48873816|48873970 hsa-miR-302b-5p 0 0 1
chr19:48873816|48873970 hsa-miR-302b-3p 0 0 1
chr19:48873816|48873970 hsa-miR-302c-5p 0 0 1
chr19:48873816|48873970 hsa-miR-302c-3p 0 0 1
chr19:48873816|48873970 hsa-miR-302d-5p 0 0 1
chr19:48873816|48873970 hsa-miR-302d-3p 0 0 1
chr19:48873816|48873970 hsa-miR-372-5p 0 0 1
chr19:48873816|48873970 hsa-miR-372-3p 0 0 1
chr19:48873816|48873970 hsa-miR-373-5p 0 0 1
chr19:48873816|48873970 hsa-miR-373-3p 0 0 1
chr19:48873816|48873970 hsa-miR-520e-5p 0 0 1
chr19:48873816|48873970 hsa-miR-520e-3p 0 0 1
chr19:48873816|48873970 hsa-miR-520b-5p 0 0 1
chr19:48873816|48873970 hsa-miR-520b-3p 0 0 1
chr19:48873816|48873970 hsa-miR-612 0 0 1
chr19:48873816|48873970 hsa-miR-298 1 0 1
chr19:48873816|48873970 hsa-miR-1236-5p 0 0 1
chr19:48873816|48873970 hsa-miR-1236-3p 0 0 1
chr19:48873816|48873970 hsa-miR-302e 0 0 1
chr19:48873816|48873970 hsa-miR-512-3p 0 0 1
chr19:48873816|48873970 hsa-miR-331-3p 0 0 1
chr19:48873816|48873970 hsa-miR-520d-3p 0 0 1
chr19:48873816|48873970 hsa-miR-520a-3p 0 0 1
chr19:48873816|48873970 hsa-miR-520c-3p 0 0 1
chr19:48873816|48873970 hsa-miR-1285 0 0 1
chr19:48873816|48873970 hsa-miR-762 1 0 0
chr19:48873816|48873970 hsa-miR-892b 1 0 0
chr19:48873816|48873970 hsa-miR-3911 1 0 0
chr19:48873816|48873970 hsa-miR-378g 1 0 0
chr19:48873816|48873970 hsa-miR-8089 1 0 0
chr19:48873816|48873970 hsa-miR-6749-3p 1 0 0
chr19:48873816|48873970 hsa-miR-212-5p 1 0 0
chr19:48873816|48873970 hsa-miR-6873-3p 1 0 0
chr19:48873816|48873970 hsa-let-7b-5p 1 0 0
chr19:48873816|48873970 hsa-miR-6830-3p 1 0 0
chr19:48873816|48873970 hsa-miR-6739-3p 1 0 0
chr19:48873816|48873970 hsa-miR-378a-5p 1 0 0
chr19:48873816|48873970 hsa-miR-6800-3p 1 0 0
chr19:48873816|48873970 hsa-miR-6893-5p 1 0 0
chr19:48873816|48873970 hsa-miR-3620-5p 1 0 0
chr19:48873816|48873970 hsa-miR-6511a-5p 1 0 0
chr19:48873816|48873970 hsa-miR-6791-5p 1 0 0
chr19:48873816|48873970 hsa-miR-10400-3p 1 0 0
chr19:48873816|48873970 hsa-miR-4723-3p 1 0 0
chr19:48873816|48873970 hsa-miR-6783-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:48873816|48873970
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MSPGSKPSTWVSCPGEEENQATEDKRTERSKGARK
Nucleotide Sequence TTGTCTCCAGGATCCAAGCCCAGCACTTGGGTGTCTTGCCCAGGGGAGGAAGAGAATCAAGCCACGGAGGATAAAAGAACAGAAAGAAGTAAAGGAGCCAGGAAG
CircID chr19:48873816|48873970
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MPCLQDPSPALGCLAQGRKRIKPRRIKEQKEVKEPGR
Nucleotide Sequence CTGCCTTGTCTCCAGGATCCAAGCCCAGCACTTGGGTGTCTTGCCCAGGGGAGGAAGAGAATCAAGCCACGGAGGATAAAAGAACAGAAAGAAGTAAAGGAGCCAGGAAGA
CircID chr19:48873816|48873970
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MFFYPPWLDSLPPLGKTPKCWAWILETRQK
Nucleotide Sequence CTGTTCTTTTATCCTCCGTGGCTTGATTCTCTTCCTCCCCTGGGCAAGACACCCAAGTGCTGGGCTTGGATCCTGGAGACAAGGCAGAAGTAG
CircID chr19:48873816|48873970
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MILFLPWARHPSAGLGSWRQGRSRGSVSFFLYSFFI
Nucleotide Sequence TTGATTCTCTTCCTCCCCTGGGCAAGACACCCAAGTGCTGGGCTTGGATCCTGGAGACAAGGCAGAAGTAGAGGTTCTGTGAGCTTCTTTCTTTACAGCTTCTTCATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab