CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48925307|48925490
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCCCACCCTGCCCATCCCTGGCCTCCAAAGTGCTGAGCTTATAGGCATGAACCACTGTGCCTGGCCAGAATTTCATTTAAACAAATACTCCTGGCCGGGCGTGGTGGCTCAGGCCTGTAATCCCAACACTGTGGGAGGCCGAGGCGGGGGGATCACCTGAGGTCAGGAGTTCTCAAGACCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48925307|48925490 hsa-miR-146a-5p 0 0 1
chr19:48925307|48925490 hsa-miR-146a-3p 0 0 1
chr19:48925307|48925490 hsa-miR-496 0 0 1
chr19:48925307|48925490 hsa-miR-526b-5p 0 0 1
chr19:48925307|48925490 hsa-miR-526b-3p 0 0 1
chr19:48925307|48925490 hsa-miR-580-5p 0 0 1
chr19:48925307|48925490 hsa-miR-580-3p 0 0 1
chr19:48925307|48925490 hsa-miR-589-5p 0 0 1
chr19:48925307|48925490 hsa-miR-589-3p 0 0 1
chr19:48925307|48925490 hsa-miR-650 0 0 1
chr19:48925307|48925490 hsa-miR-665 0 0 1
chr19:48925307|48925490 hsa-miR-1234-3p 0 0 1
chr19:48925307|48925490 hsa-miR-1206 0 0 1
chr19:48925307|48925490 hsa-miR-1234 0 0 1
chr19:48925307|48925490 hsa-miR-140-5p 0 1 1
chr19:48925307|48925490 hsa-miR-125a-3p 0 0 1
chr19:48925307|48925490 hsa-miR-532-3p 0 0 1
chr19:48925307|48925490 hsa-miR-188-3p 0 1 1
chr19:48925307|48925490 hsa-miR-1207-5p 1 0 1
chr19:48925307|48925490 hsa-miR-769-3p 0 0 1
chr19:48925307|48925490 hsa-miR-146b-5p 0 0 1
chr19:48925307|48925490 hsa-miR-450b-3p 0 0 1
chr19:48925307|48925490 hsa-miR-128 0 0 1
chr19:48925307|48925490 hsa-miR-1300 0 0 1
chr19:48925307|48925490 hsa-miR-768-5p 0 0 1
chr19:48925307|48925490 hsa-miR-2861 1 0 0
chr19:48925307|48925490 hsa-miR-4269 0 1 0
chr19:48925307|48925490 hsa-miR-4425 0 1 0
chr19:48925307|48925490 hsa-miR-4443 0 1 0
chr19:48925307|48925490 hsa-miR-4651 0 1 0
chr19:48925307|48925490 hsa-miR-12128 1 1 0
chr19:48925307|48925490 hsa-miR-203a-5p 0 1 0
chr19:48925307|48925490 hsa-miR-4665-3p 1 0 0
chr19:48925307|48925490 hsa-miR-1972 0 1 0
chr19:48925307|48925490 hsa-miR-1227-5p 1 0 0
chr19:48925307|48925490 hsa-miR-6089 1 1 0
chr19:48925307|48925490 hsa-miR-6757-5p 0 1 0
chr19:48925307|48925490 hsa-miR-7154-3p 1 0 0
chr19:48925307|48925490 hsa-miR-4655-5p 1 0 0
chr19:48925307|48925490 hsa-miR-6827-5p 1 0 0
chr19:48925307|48925490 hsa-miR-5008-5p 1 0 0
chr19:48925307|48925490 hsa-miR-5006-5p 1 0 0
chr19:48925307|48925490 hsa-miR-3934-3p 1 0 0
chr19:48925307|48925490 hsa-miR-939-3p 0 1 0
chr19:48925307|48925490 hsa-miR-6763-3p 1 0 0
chr19:48925307|48925490 hsa-miR-7108-3p 1 0 0
chr19:48925307|48925490 hsa-miR-1229-5p 0 1 0
chr19:48925307|48925490 hsa-miR-6784-5p 1 0 0
chr19:48925307|48925490 hsa-miR-4640-5p 1 1 0
chr19:48925307|48925490 hsa-miR-378a-5p 0 1 0
chr19:48925307|48925490 hsa-miR-3190-5p 0 1 0
chr19:48925307|48925490 hsa-miR-6719-3p 0 1 0
chr19:48925307|48925490 hsa-miR-6513-5p 0 1 0
chr19:48925307|48925490 hsa-miR-383-3p 1 0 0
chr19:48925307|48925490 hsa-miR-216a-3p 0 1 0
chr19:48925307|48925490 hsa-miR-7113-5p 0 1 0
chr19:48925307|48925490 hsa-miR-3177-3p 1 0 0
chr19:48925307|48925490 hsa-miR-4763-3p 1 0 0
chr19:48925307|48925490 hsa-miR-6722-3p 1 0 0
chr19:48925307|48925490 hsa-miR-6879-5p 1 0 0
chr19:48925307|48925490 hsa-miR-5189-5p 1 0 0
chr19:48925307|48925490 hsa-miR-328-5p 1 0 0
chr19:48925307|48925490 hsa-miR-4649-5p 1 0 0
chr19:48925307|48925490 hsa-miR-4685-5p 1 0 0
chr19:48925307|48925490 hsa-miR-4726-5p 1 0 0
chr19:48925307|48925490 hsa-miR-1266-5p 1 0 0
chr19:48925307|48925490 hsa-miR-3198 1 0 0
chr19:48925307|48925490 hsa-miR-1199-5p 0 1 0
chr19:48925307|48925490 hsa-miR-6762-5p 1 0 0
chr19:48925307|48925490 hsa-miR-6837-5p 1 0 0
chr19:48925307|48925490 hsa-miR-619-5p 0 1 0
chr19:48925307|48925490 hsa-miR-664a-5p 0 1 0
chr19:48925307|48925490 hsa-miR-6715b-5p 0 1 0
chr19:48925307|48925490 hsa-miR-6811-5p 0 1 0
chr19:48925307|48925490 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:48925307|48925490
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MPIPGLQSAELIGMNHCAWPEFHLNKYSWPGVVAQACNPNTVGGRGGGIT
Nucleotide Sequence CTGCCCATCCCTGGCCTCCAAAGTGCTGAGCTTATAGGCATGAACCACTGTGCCTGGCCAGAATTTCATTTAAACAAATACTCCTGGCCGGGCGTGGTGGCTCAGGCCTGTAATCCCAACACTGTGGGAGGCCGAGGCGGGGGGATCACCTGA
CircID chr19:48925307|48925490
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MTSGDPPASASHSVGITGLSHHARPGVFV
Nucleotide Sequence CTGACCTCAGGTGATCCCCCCGCCTCGGCCTCCCACAGTGTTGGGATTACAGGCCTGAGCCACCACGCCCGGCCAGGAGTATTTGTTTAA
CircID chr19:48925307|48925490
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MKFWPGTVVHAYKLSTLEARDGQGG
Nucleotide Sequence ATGAAATTCTGGCCAGGCACAGTGGTTCATGCCTATAAGCTCAGCACTTTGGAGGCCAGGGATGGGCAGGGTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab